Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21047 and SM_b21048 are separated by 126 nucleotides
SM_b21047: SM_b21047 - hypothetical protein, at 679,969 to 680,235
_b21047
SM_b21048: SM_b21048 - hypothetical protein, at 680,362 to 681,807
_b21048
Position (kb) 679
680
681 Strain fitness (log2 ratio) -2
-1
0
1
2 at 679.139 kb on + strand at 679.178 kb on + strand at 679.179 kb on - strand at 679.179 kb on - strand at 679.276 kb on - strand at 679.309 kb on - strand at 679.344 kb on + strand at 679.450 kb on + strand at 679.450 kb on + strand at 679.451 kb on - strand at 679.451 kb on - strand at 679.452 kb on + strand at 679.453 kb on - strand at 679.553 kb on - strand at 679.662 kb on - strand at 679.666 kb on + strand at 679.785 kb on + strand at 679.804 kb on - strand at 679.807 kb on + strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.862 kb on + strand at 679.862 kb on + strand at 679.863 kb on - strand at 679.863 kb on - strand at 679.893 kb on - strand at 679.912 kb on - strand at 679.919 kb on - strand at 679.948 kb on + strand at 679.971 kb on - strand at 679.981 kb on - strand at 679.981 kb on - strand at 680.061 kb on + strand, within SM_b21047 at 680.101 kb on - strand, within SM_b21047 at 680.142 kb on + strand, within SM_b21047 at 680.143 kb on - strand, within SM_b21047 at 680.143 kb on - strand, within SM_b21047 at 680.360 kb on + strand at 680.360 kb on + strand at 680.363 kb on + strand at 680.363 kb on + strand at 680.364 kb on - strand at 680.364 kb on - strand at 680.410 kb on + strand at 680.410 kb on + strand at 680.411 kb on - strand at 680.411 kb on - strand at 680.411 kb on - strand at 680.411 kb on - strand at 680.602 kb on + strand, within SM_b21048 at 680.623 kb on + strand, within SM_b21048 at 680.624 kb on - strand, within SM_b21048 at 680.626 kb on - strand, within SM_b21048 at 680.650 kb on - strand, within SM_b21048 at 680.763 kb on + strand, within SM_b21048 at 680.763 kb on + strand, within SM_b21048 at 680.763 kb on + strand, within SM_b21048 at 680.766 kb on + strand, within SM_b21048 at 680.766 kb on + strand, within SM_b21048 at 680.775 kb on - strand, within SM_b21048 at 680.864 kb on + strand, within SM_b21048 at 680.864 kb on + strand, within SM_b21048 at 680.865 kb on - strand, within SM_b21048 at 681.005 kb on + strand, within SM_b21048 at 681.093 kb on - strand, within SM_b21048 at 681.093 kb on - strand, within SM_b21048 at 681.098 kb on + strand, within SM_b21048 at 681.206 kb on + strand, within SM_b21048 at 681.207 kb on - strand, within SM_b21048
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 679,139 + +0.1 679,178 + +1.2 679,179 - +0.3 679,179 - +1.4 679,276 - +1.7 679,309 - -0.1 679,344 + +0.5 679,450 + -0.3 679,450 + -0.6 679,451 - -0.1 679,451 - -0.1 679,452 + -0.9 679,453 - +0.2 679,553 - +0.2 679,662 - -1.8 679,666 + +0.3 679,785 + -0.1 679,804 - -0.0 679,807 + -1.8 679,808 - -0.4 679,808 - +0.3 679,808 - -0.4 679,808 - +0.5 679,808 - -0.2 679,862 + +0.0 679,862 + +0.4 679,863 - +0.5 679,863 - +0.0 679,893 - +1.9 679,912 - -1.7 679,919 - -0.5 679,948 + -0.0 679,971 - -0.2 679,981 - +0.8 679,981 - -0.5 680,061 + SM_b21047 0.34 +2.5 680,101 - SM_b21047 0.49 +0.3 680,142 + SM_b21047 0.65 +0.2 680,143 - SM_b21047 0.65 -0.2 680,143 - SM_b21047 0.65 -0.3 680,360 + +0.9 680,360 + +0.2 680,363 + -0.9 680,363 + +0.7 680,364 - -0.5 680,364 - +1.2 680,410 + +0.5 680,410 + +0.1 680,411 - -0.0 680,411 - +1.1 680,411 - -0.8 680,411 - -0.3 680,602 + SM_b21048 0.17 -0.2 680,623 + SM_b21048 0.18 +0.3 680,624 - SM_b21048 0.18 -0.1 680,626 - SM_b21048 0.18 -1.1 680,650 - SM_b21048 0.20 +0.6 680,763 + SM_b21048 0.28 -0.2 680,763 + SM_b21048 0.28 -1.1 680,763 + SM_b21048 0.28 -0.1 680,766 + SM_b21048 0.28 +0.1 680,766 + SM_b21048 0.28 -0.4 680,775 - SM_b21048 0.29 +0.4 680,864 + SM_b21048 0.35 +0.4 680,864 + SM_b21048 0.35 -0.6 680,865 - SM_b21048 0.35 +2.2 681,005 + SM_b21048 0.44 -2.5 681,093 - SM_b21048 0.51 -0.2 681,093 - SM_b21048 0.51 +0.8 681,098 + SM_b21048 0.51 -0.8 681,206 + SM_b21048 0.58 +0.9 681,207 - SM_b21048 0.58 -0.2
Or see this region's nucleotide sequence