Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21041 and SM_b21042 are separated by 116 nucleotides SM_b21042 and SM_b21043 are separated by 609 nucleotides
SM_b21041: SM_b21041 - hypothetical protein, at 659,874 to 661,109
_b21041
SM_b21042: SM_b21042 - peptidase T, at 661,226 to 662,467
_b21042
SM_b21043: SM_b21043 - hypothetical protein, at 663,077 to 663,646
_b21043
Position (kb) 661
662
663 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 660.315 kb on + strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.442 kb on - strand, within SM_b21041 at 660.463 kb on - strand, within SM_b21041 at 660.642 kb on + strand, within SM_b21041 at 660.780 kb on + strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.908 kb on + strand, within SM_b21041 at 660.908 kb on + strand, within SM_b21041 at 660.915 kb on - strand, within SM_b21041 at 660.915 kb on - strand, within SM_b21041 at 660.931 kb on - strand, within SM_b21041 at 661.125 kb on + strand at 661.125 kb on + strand at 661.140 kb on + strand at 661.141 kb on - strand at 661.141 kb on - strand at 661.582 kb on - strand, within SM_b21042 at 661.690 kb on + strand, within SM_b21042 at 661.690 kb on + strand, within SM_b21042 at 661.691 kb on - strand, within SM_b21042 at 662.198 kb on + strand, within SM_b21042 at 662.199 kb on - strand, within SM_b21042 at 662.340 kb on + strand, within SM_b21042 at 662.369 kb on + strand at 662.370 kb on - strand at 662.370 kb on - strand at 662.605 kb on - strand at 662.652 kb on + strand at 662.693 kb on + strand at 662.693 kb on + strand at 662.694 kb on - strand at 662.699 kb on - strand at 662.699 kb on - strand at 662.699 kb on - strand at 662.744 kb on + strand at 662.782 kb on - strand at 662.801 kb on + strand at 662.802 kb on - strand at 662.802 kb on - strand at 662.935 kb on - strand at 662.936 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.941 kb on - strand at 662.941 kb on - strand at 662.941 kb on - strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.947 kb on - strand at 662.947 kb on - strand at 662.947 kb on - strand at 662.947 kb on - strand at 663.026 kb on + strand at 663.027 kb on - strand at 663.034 kb on - strand at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.232 kb on - strand, within SM_b21043 at 663.232 kb on - strand, within SM_b21043 at 663.387 kb on + strand, within SM_b21043 at 663.391 kb on + strand, within SM_b21043 at 663.450 kb on + strand, within SM_b21043 at 663.450 kb on + strand, within SM_b21043
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 660,315 + SM_b21041 0.36 -0.1 660,316 - SM_b21041 0.36 -0.7 660,316 - SM_b21041 0.36 -0.1 660,316 - SM_b21041 0.36 -0.6 660,416 + SM_b21041 0.44 +0.9 660,416 + SM_b21041 0.44 +0.7 660,442 - SM_b21041 0.46 +0.7 660,463 - SM_b21041 0.48 -0.1 660,642 + SM_b21041 0.62 +0.3 660,780 + SM_b21041 0.73 -1.1 660,802 - SM_b21041 0.75 -0.4 660,802 - SM_b21041 0.75 -0.3 660,802 - SM_b21041 0.75 +0.2 660,908 + SM_b21041 0.84 -0.2 660,908 + SM_b21041 0.84 -0.3 660,915 - SM_b21041 0.84 +0.3 660,915 - SM_b21041 0.84 -0.2 660,931 - SM_b21041 0.86 +0.1 661,125 + -1.0 661,125 + -1.2 661,140 + -0.2 661,141 - -0.1 661,141 - +0.7 661,582 - SM_b21042 0.29 -0.4 661,690 + SM_b21042 0.37 -0.1 661,690 + SM_b21042 0.37 -0.6 661,691 - SM_b21042 0.37 +0.4 662,198 + SM_b21042 0.78 +0.2 662,199 - SM_b21042 0.78 +0.5 662,340 + SM_b21042 0.90 +0.7 662,369 + -1.3 662,370 - -0.2 662,370 - +1.1 662,605 - +0.9 662,652 + -1.2 662,693 + +0.1 662,693 + -0.7 662,694 - -0.2 662,699 - +0.5 662,699 - -1.3 662,699 - -0.0 662,744 + -0.5 662,782 - +3.2 662,801 + -1.3 662,802 - +0.7 662,802 - -1.2 662,935 - -1.2 662,936 + +0.0 662,940 + +0.9 662,940 + +2.2 662,940 + -0.5 662,940 + -0.1 662,941 - +0.5 662,941 - -0.6 662,941 - +0.2 662,946 + +0.2 662,946 + +4.2 662,946 + -0.2 662,946 + +0.1 662,947 - -0.4 662,947 - -0.3 662,947 - -0.2 662,947 - -0.9 663,026 + -0.1 663,027 - +0.1 663,034 - -0.3 663,229 + SM_b21043 0.27 -0.3 663,229 + SM_b21043 0.27 +0.2 663,229 + SM_b21043 0.27 -0.7 663,229 + SM_b21043 0.27 -0.8 663,230 - SM_b21043 0.27 +0.2 663,230 - SM_b21043 0.27 -0.9 663,230 - SM_b21043 0.27 +0.1 663,230 - SM_b21043 0.27 +1.8 663,230 - SM_b21043 0.27 -1.7 663,230 - SM_b21043 0.27 +1.0 663,232 - SM_b21043 0.27 +0.7 663,232 - SM_b21043 0.27 -0.7 663,387 + SM_b21043 0.54 -0.5 663,391 + SM_b21043 0.55 +0.8 663,450 + SM_b21043 0.65 -0.1 663,450 + SM_b21043 0.65 -0.3
Or see this region's nucleotide sequence