Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21035 and SM_b21036 are separated by 138 nucleotides SM_b21036 and SM_b21037 are separated by 162 nucleotides SM_b21037 and SM_b21038 are separated by 6 nucleotides SM_b21038 and SM_b21039 are separated by 13 nucleotides
SM_b21035: SM_b21035 - hypothetical protein, at 653,580 to 653,798
_b21035
SM_b21036: SM_b21036 - hypothetical protein, at 653,937 to 654,485
_b21036
SM_b21037: SM_b21037 - oligopeptidemurein peptide ABC transporter substrate-binding protein precursor, at 654,648 to 656,243
_b21037
SM_b21038: SM_b21038 - oligopeptidemurein peptide ABC transporter permease, at 656,250 to 657,227
_b21038
SM_b21039: SM_b21039 - oligopeptidemurein peptide ABC transporter permease, at 657,241 to 658,116
_b21039
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 653.672 kb on + strand, within SM_b21035 at 653.673 kb on - strand, within SM_b21035 at 653.673 kb on - strand, within SM_b21035 at 653.771 kb on + strand, within SM_b21035 at 653.772 kb on - strand, within SM_b21035 at 653.772 kb on - strand, within SM_b21035 at 653.954 kb on + strand at 653.954 kb on + strand at 653.954 kb on + strand at 653.954 kb on + strand at 653.992 kb on - strand, within SM_b21036 at 654.533 kb on + strand at 654.533 kb on + strand at 654.533 kb on + strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.541 kb on + strand at 654.542 kb on - strand at 654.542 kb on - strand at 654.621 kb on - strand at 654.762 kb on - strand at 654.768 kb on + strand at 654.768 kb on + strand at 654.769 kb on - strand at 654.769 kb on - strand at 654.795 kb on + strand at 654.796 kb on - strand at 654.833 kb on + strand, within SM_b21037 at 654.833 kb on + strand, within SM_b21037 at 654.834 kb on - strand, within SM_b21037 at 654.838 kb on - strand, within SM_b21037 at 654.852 kb on + strand, within SM_b21037 at 655.047 kb on + strand, within SM_b21037 at 655.048 kb on - strand, within SM_b21037 at 655.230 kb on + strand, within SM_b21037 at 655.230 kb on + strand, within SM_b21037 at 655.287 kb on + strand, within SM_b21037 at 655.287 kb on + strand, within SM_b21037 at 655.319 kb on + strand, within SM_b21037 at 655.320 kb on - strand, within SM_b21037 at 655.475 kb on - strand, within SM_b21037 at 655.701 kb on + strand, within SM_b21037 at 655.702 kb on - strand, within SM_b21037 at 656.013 kb on + strand, within SM_b21037 at 656.013 kb on + strand, within SM_b21037 at 656.013 kb on + strand, within SM_b21037 at 656.065 kb on + strand, within SM_b21037 at 656.132 kb on - strand at 656.139 kb on + strand at 656.139 kb on + strand at 656.184 kb on + strand at 656.185 kb on - strand at 656.384 kb on + strand, within SM_b21038 at 656.448 kb on + strand, within SM_b21038 at 656.449 kb on - strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.501 kb on - strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.812 kb on + strand, within SM_b21038 at 656.813 kb on - strand, within SM_b21038 at 656.837 kb on - strand, within SM_b21038 at 656.909 kb on - strand, within SM_b21038 at 656.913 kb on + strand, within SM_b21038 at 657.189 kb on + strand at 657.190 kb on - strand at 657.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 653,672 + SM_b21035 0.42 -0.3 653,673 - SM_b21035 0.42 -0.6 653,673 - SM_b21035 0.42 -0.4 653,771 + SM_b21035 0.87 -0.0 653,772 - SM_b21035 0.88 -1.2 653,772 - SM_b21035 0.88 -0.5 653,954 + -0.6 653,954 + +0.3 653,954 + -0.0 653,954 + -0.7 653,992 - SM_b21036 0.10 -0.6 654,533 + -0.9 654,533 + -1.0 654,533 + +0.0 654,534 - -1.8 654,534 - +0.6 654,541 + +0.8 654,542 - -0.3 654,542 - -1.2 654,621 - -0.2 654,762 - -0.6 654,768 + -1.1 654,768 + -0.0 654,769 - +0.4 654,769 - +0.0 654,795 + -0.2 654,796 - +0.3 654,833 + SM_b21037 0.12 +1.3 654,833 + SM_b21037 0.12 +1.0 654,834 - SM_b21037 0.12 +1.0 654,838 - SM_b21037 0.12 -0.2 654,852 + SM_b21037 0.13 -0.5 655,047 + SM_b21037 0.25 -0.3 655,048 - SM_b21037 0.25 -1.3 655,230 + SM_b21037 0.36 +2.8 655,230 + SM_b21037 0.36 +0.7 655,287 + SM_b21037 0.40 +0.4 655,287 + SM_b21037 0.40 -0.4 655,319 + SM_b21037 0.42 +0.1 655,320 - SM_b21037 0.42 -2.2 655,475 - SM_b21037 0.52 +0.0 655,701 + SM_b21037 0.66 -0.7 655,702 - SM_b21037 0.66 +1.3 656,013 + SM_b21037 0.86 +0.6 656,013 + SM_b21037 0.86 +0.8 656,013 + SM_b21037 0.86 +1.3 656,065 + SM_b21037 0.89 +0.5 656,132 - +0.3 656,139 + -0.0 656,139 + +0.2 656,184 + -0.1 656,185 - -0.3 656,384 + SM_b21038 0.14 -0.1 656,448 + SM_b21038 0.20 +0.6 656,449 - SM_b21038 0.20 -0.4 656,496 + SM_b21038 0.25 +0.2 656,496 + SM_b21038 0.25 +0.0 656,496 + SM_b21038 0.25 -0.0 656,496 + SM_b21038 0.25 +0.2 656,497 - SM_b21038 0.25 -0.7 656,497 - SM_b21038 0.25 -1.8 656,497 - SM_b21038 0.25 +1.5 656,497 - SM_b21038 0.25 -0.8 656,497 - SM_b21038 0.25 +0.5 656,501 - SM_b21038 0.26 -0.2 656,502 + SM_b21038 0.26 +2.3 656,502 + SM_b21038 0.26 +0.1 656,502 + SM_b21038 0.26 -1.8 656,502 + SM_b21038 0.26 +1.5 656,503 - SM_b21038 0.26 +0.0 656,503 - SM_b21038 0.26 -0.7 656,503 - SM_b21038 0.26 +1.5 656,503 - SM_b21038 0.26 +0.5 656,503 - SM_b21038 0.26 +0.7 656,503 - SM_b21038 0.26 +1.0 656,503 - SM_b21038 0.26 +0.4 656,503 - SM_b21038 0.26 +0.4 656,812 + SM_b21038 0.57 +0.3 656,813 - SM_b21038 0.58 +0.1 656,837 - SM_b21038 0.60 +0.5 656,909 - SM_b21038 0.67 -0.9 656,913 + SM_b21038 0.68 -0.1 657,189 + -1.2 657,190 - -0.9 657,190 - +0.8
Or see this region's nucleotide sequence