Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20912 and SM_b20913 overlap by 19 nucleotides SM_b20913 and SM_b21682 overlap by 8 nucleotides SM_b21682 and SM_b20914 are separated by 17 nucleotides
SM_b20912: SM_b20912 - ATP-dependent DNA ligase, at 1,319,810 to 1,320,904
_b20912
SM_b20913: SM_b20913 - hypothetical protein, at 1,320,886 to 1,321,488
_b20913
SM_b21682: SM_b21682 - hypothetical protein, at 1,321,481 to 1,321,666
_b21682
SM_b20914: SM_b20914 - hypothetical protein, at 1,321,684 to 1,322,694
_b20914
Position (kb)
1320
1321
1322 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1319.931 kb on - strand, within SM_b20912 at 1319.945 kb on + strand, within SM_b20912 at 1319.945 kb on + strand, within SM_b20912 at 1320.083 kb on + strand, within SM_b20912 at 1320.083 kb on + strand, within SM_b20912 at 1320.084 kb on - strand, within SM_b20912 at 1320.084 kb on - strand, within SM_b20912 at 1320.142 kb on + strand, within SM_b20912 at 1320.142 kb on + strand, within SM_b20912 at 1320.143 kb on - strand, within SM_b20912 at 1320.143 kb on - strand, within SM_b20912 at 1320.174 kb on + strand, within SM_b20912 at 1320.174 kb on + strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.266 kb on - strand, within SM_b20912 at 1320.318 kb on + strand, within SM_b20912 at 1320.319 kb on - strand, within SM_b20912 at 1320.507 kb on + strand, within SM_b20912 at 1320.525 kb on + strand, within SM_b20912 at 1320.525 kb on + strand, within SM_b20912 at 1320.722 kb on + strand, within SM_b20912 at 1320.722 kb on + strand, within SM_b20912 at 1320.815 kb on + strand at 1320.860 kb on + strand at 1320.861 kb on - strand at 1320.861 kb on - strand at 1320.906 kb on - strand at 1320.968 kb on + strand, within SM_b20913 at 1321.132 kb on + strand, within SM_b20913 at 1321.145 kb on + strand, within SM_b20913 at 1321.145 kb on + strand, within SM_b20913 at 1321.355 kb on + strand, within SM_b20913 at 1321.382 kb on - strand, within SM_b20913 at 1321.382 kb on - strand, within SM_b20913 at 1321.526 kb on + strand, within SM_b21682 at 1321.527 kb on - strand, within SM_b21682 at 1321.527 kb on - strand, within SM_b21682 at 1321.527 kb on - strand, within SM_b21682 at 1321.527 kb on - strand, within SM_b21682 at 1321.536 kb on - strand, within SM_b21682 at 1321.536 kb on - strand, within SM_b21682 at 1321.685 kb on + strand at 1321.686 kb on - strand at 1321.686 kb on - strand at 1321.766 kb on + strand at 1321.766 kb on + strand at 1321.767 kb on - strand at 1321.769 kb on + strand at 1321.770 kb on - strand at 1321.788 kb on - strand, within SM_b20914 at 1321.788 kb on - strand, within SM_b20914 at 1321.983 kb on + strand, within SM_b20914 at 1321.984 kb on - strand, within SM_b20914 at 1321.995 kb on - strand, within SM_b20914 at 1321.995 kb on - strand, within SM_b20914 at 1322.022 kb on - strand, within SM_b20914 at 1322.022 kb on - strand, within SM_b20914 at 1322.072 kb on + strand, within SM_b20914 at 1322.073 kb on - strand, within SM_b20914 at 1322.073 kb on - strand, within SM_b20914 at 1322.073 kb on - strand, within SM_b20914 at 1322.073 kb on - strand, within SM_b20914 at 1322.076 kb on + strand, within SM_b20914 at 1322.077 kb on - strand, within SM_b20914 at 1322.077 kb on - strand, within SM_b20914 at 1322.079 kb on - strand, within SM_b20914 at 1322.119 kb on - strand, within SM_b20914 at 1322.142 kb on - strand at 1322.153 kb on + strand, within SM_b20914 at 1322.171 kb on + strand, within SM_b20914 at 1322.171 kb on + strand, within SM_b20914 at 1322.171 kb on + strand, within SM_b20914 at 1322.172 kb on - strand, within SM_b20914 at 1322.172 kb on - strand, within SM_b20914 at 1322.172 kb on - strand, within SM_b20914 at 1322.172 kb on - strand, within SM_b20914 at 1322.172 kb on - strand, within SM_b20914 at 1322.180 kb on + strand, within SM_b20914 at 1322.180 kb on + strand, within SM_b20914 at 1322.181 kb on - strand, within SM_b20914 at 1322.181 kb on - strand, within SM_b20914 at 1322.243 kb on + strand, within SM_b20914 at 1322.379 kb on + strand, within SM_b20914 at 1322.380 kb on - strand, within SM_b20914 at 1322.382 kb on - strand, within SM_b20914 at 1322.382 kb on - strand, within SM_b20914 at 1322.486 kb on + strand, within SM_b20914
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,319,931 - SM_b20912 0.11 -1.2 1,319,945 + SM_b20912 0.12 +0.7 1,319,945 + SM_b20912 0.12 -0.0 1,320,083 + SM_b20912 0.25 -0.1 1,320,083 + SM_b20912 0.25 -0.1 1,320,084 - SM_b20912 0.25 -0.2 1,320,084 - SM_b20912 0.25 +0.7 1,320,142 + SM_b20912 0.30 -0.4 1,320,142 + SM_b20912 0.30 +0.1 1,320,143 - SM_b20912 0.30 -0.2 1,320,143 - SM_b20912 0.30 -1.5 1,320,174 + SM_b20912 0.33 -0.5 1,320,174 + SM_b20912 0.33 +0.8 1,320,175 - SM_b20912 0.33 -0.4 1,320,175 - SM_b20912 0.33 -0.4 1,320,175 - SM_b20912 0.33 -0.1 1,320,266 - SM_b20912 0.42 -0.1 1,320,318 + SM_b20912 0.46 +0.1 1,320,319 - SM_b20912 0.46 -0.2 1,320,507 + SM_b20912 0.64 -0.9 1,320,525 + SM_b20912 0.65 -0.2 1,320,525 + SM_b20912 0.65 -0.1 1,320,722 + SM_b20912 0.83 +1.0 1,320,722 + SM_b20912 0.83 -1.1 1,320,815 + +0.2 1,320,860 + +1.2 1,320,861 - +0.4 1,320,861 - +0.0 1,320,906 - -0.4 1,320,968 + SM_b20913 0.14 +1.1 1,321,132 + SM_b20913 0.41 -1.3 1,321,145 + SM_b20913 0.43 -0.7 1,321,145 + SM_b20913 0.43 -0.7 1,321,355 + SM_b20913 0.78 -0.7 1,321,382 - SM_b20913 0.82 -2.9 1,321,382 - SM_b20913 0.82 -2.0 1,321,526 + SM_b21682 0.24 +0.4 1,321,527 - SM_b21682 0.25 -0.5 1,321,527 - SM_b21682 0.25 +0.7 1,321,527 - SM_b21682 0.25 -0.8 1,321,527 - SM_b21682 0.25 +0.1 1,321,536 - SM_b21682 0.30 -0.4 1,321,536 - SM_b21682 0.30 +1.6 1,321,685 + -0.2 1,321,686 - +0.2 1,321,686 - -1.4 1,321,766 + -0.0 1,321,766 + +0.2 1,321,767 - -1.4 1,321,769 + +0.3 1,321,770 - -0.1 1,321,788 - SM_b20914 0.10 -0.6 1,321,788 - SM_b20914 0.10 -0.5 1,321,983 + SM_b20914 0.30 -0.3 1,321,984 - SM_b20914 0.30 +0.1 1,321,995 - SM_b20914 0.31 +1.0 1,321,995 - SM_b20914 0.31 -0.1 1,322,022 - SM_b20914 0.33 +0.1 1,322,022 - SM_b20914 0.33 +0.5 1,322,072 + SM_b20914 0.38 -1.2 1,322,073 - SM_b20914 0.38 +0.8 1,322,073 - SM_b20914 0.38 +0.0 1,322,073 - SM_b20914 0.38 +2.3 1,322,073 - SM_b20914 0.38 +0.7 1,322,076 + SM_b20914 0.39 -0.3 1,322,077 - SM_b20914 0.39 -0.5 1,322,077 - SM_b20914 0.39 +0.7 1,322,079 - SM_b20914 0.39 -0.1 1,322,119 - SM_b20914 0.43 -0.0 1,322,142 - +3.0 1,322,153 + SM_b20914 0.46 +0.6 1,322,171 + SM_b20914 0.48 -0.4 1,322,171 + SM_b20914 0.48 +0.2 1,322,171 + SM_b20914 0.48 +0.5 1,322,172 - SM_b20914 0.48 +0.2 1,322,172 - SM_b20914 0.48 -0.3 1,322,172 - SM_b20914 0.48 -0.9 1,322,172 - SM_b20914 0.48 -0.8 1,322,172 - SM_b20914 0.48 +1.7 1,322,180 + SM_b20914 0.49 +0.5 1,322,180 + SM_b20914 0.49 -0.3 1,322,181 - SM_b20914 0.49 +0.7 1,322,181 - SM_b20914 0.49 +0.3 1,322,243 + SM_b20914 0.55 -1.4 1,322,379 + SM_b20914 0.69 -0.2 1,322,380 - SM_b20914 0.69 -0.2 1,322,382 - SM_b20914 0.69 +1.1 1,322,382 - SM_b20914 0.69 -0.7 1,322,486 + SM_b20914 0.79 +0.8
Or see this region's nucleotide sequence