Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20834 and SM_b20835 are separated by 88 nucleotides SM_b20835 and SM_b20836 overlap by 20 nucleotides SM_b20836 and SM_b20837 are separated by 540 nucleotides
SM_b20834: SM_b20834 - surface saccharide synthesis protein, at 625,738 to 627,036
_b20834
SM_b20835: SM_b20835 - hypothetical protein, at 627,125 to 628,120
_b20835
SM_b20836: SM_b20836 - heme-binding protein, at 628,101 to 628,430
_b20836
SM_b20837: SM_b20837 - hypothetical protein, at 628,971 to 629,195
_b20837
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 626.138 kb on + strand, within SM_b20834 at 626.138 kb on + strand, within SM_b20834 at 626.138 kb on + strand, within SM_b20834 at 626.139 kb on - strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.213 kb on + strand, within SM_b20834 at 626.214 kb on - strand, within SM_b20834 at 626.214 kb on - strand, within SM_b20834 at 626.489 kb on + strand, within SM_b20834 at 626.490 kb on - strand, within SM_b20834 at 626.525 kb on + strand, within SM_b20834 at 626.525 kb on + strand, within SM_b20834 at 626.526 kb on - strand, within SM_b20834 at 626.547 kb on + strand, within SM_b20834 at 626.606 kb on + strand, within SM_b20834 at 626.654 kb on + strand, within SM_b20834 at 626.654 kb on + strand, within SM_b20834 at 626.737 kb on + strand, within SM_b20834 at 626.738 kb on - strand, within SM_b20834 at 626.738 kb on - strand, within SM_b20834 at 626.915 kb on + strand at 626.998 kb on - strand at 627.068 kb on + strand at 627.069 kb on - strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.073 kb on - strand at 627.073 kb on - strand at 627.073 kb on - strand at 627.109 kb on + strand at 627.110 kb on - strand at 627.226 kb on + strand, within SM_b20835 at 627.226 kb on + strand, within SM_b20835 at 627.262 kb on - strand, within SM_b20835 at 627.277 kb on - strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.436 kb on - strand, within SM_b20835 at 627.448 kb on + strand, within SM_b20835 at 627.449 kb on - strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.502 kb on - strand, within SM_b20835 at 627.569 kb on - strand, within SM_b20835 at 627.627 kb on + strand, within SM_b20835 at 627.628 kb on - strand, within SM_b20835 at 627.666 kb on + strand, within SM_b20835 at 627.667 kb on - strand, within SM_b20835 at 627.679 kb on - strand, within SM_b20835 at 627.753 kb on - strand, within SM_b20835 at 627.777 kb on + strand, within SM_b20835 at 627.777 kb on + strand, within SM_b20835 at 627.778 kb on - strand, within SM_b20835 at 627.778 kb on - strand, within SM_b20835 at 627.829 kb on - strand, within SM_b20835 at 627.885 kb on + strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 628.107 kb on + strand at 628.130 kb on + strand at 628.131 kb on - strand at 628.232 kb on + strand, within SM_b20836 at 628.233 kb on - strand, within SM_b20836 at 628.321 kb on + strand, within SM_b20836 at 628.321 kb on + strand, within SM_b20836 at 628.321 kb on + strand, within SM_b20836 at 628.359 kb on - strand, within SM_b20836 at 628.405 kb on + strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.477 kb on - strand at 628.477 kb on - strand at 628.481 kb on + strand at 628.481 kb on + strand at 628.481 kb on + strand at 628.482 kb on - strand at 628.505 kb on - strand at 628.644 kb on + strand at 628.645 kb on - strand at 628.645 kb on - strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.698 kb on - strand at 628.698 kb on - strand at 628.698 kb on - strand at 628.854 kb on + strand at 628.855 kb on - strand at 628.972 kb on + strand at 628.972 kb on + strand at 628.972 kb on + strand at 628.973 kb on - strand at 628.973 kb on - strand at 628.973 kb on - strand at 628.974 kb on + strand at 629.059 kb on + strand, within SM_b20837 at 629.059 kb on + strand, within SM_b20837
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 626,138 + SM_b20834 0.31 +0.2 626,138 + SM_b20834 0.31 -0.3 626,138 + SM_b20834 0.31 +2.8 626,139 - SM_b20834 0.31 -0.7 626,211 + SM_b20834 0.36 +0.2 626,211 + SM_b20834 0.36 +0.0 626,211 + SM_b20834 0.36 +0.4 626,212 - SM_b20834 0.36 +0.6 626,212 - SM_b20834 0.36 +0.5 626,212 - SM_b20834 0.36 +1.7 626,213 + SM_b20834 0.37 -0.7 626,214 - SM_b20834 0.37 -1.2 626,214 - SM_b20834 0.37 -0.5 626,489 + SM_b20834 0.58 -0.0 626,490 - SM_b20834 0.58 +0.3 626,525 + SM_b20834 0.61 -0.0 626,525 + SM_b20834 0.61 -1.1 626,526 - SM_b20834 0.61 -1.2 626,547 + SM_b20834 0.62 -0.4 626,606 + SM_b20834 0.67 +6.3 626,654 + SM_b20834 0.71 +1.3 626,654 + SM_b20834 0.71 +0.2 626,737 + SM_b20834 0.77 +0.0 626,738 - SM_b20834 0.77 +0.1 626,738 - SM_b20834 0.77 -0.1 626,915 + +0.2 626,998 - +0.1 627,068 + -1.2 627,069 - -1.8 627,072 + -0.0 627,072 + -0.1 627,072 + +0.5 627,072 + +0.5 627,072 + +0.8 627,072 + -1.6 627,072 + +0.3 627,073 - +1.3 627,073 - -1.0 627,073 - +0.2 627,109 + +1.3 627,110 - -0.2 627,226 + SM_b20835 0.10 +0.5 627,226 + SM_b20835 0.10 +0.1 627,262 - SM_b20835 0.14 -1.1 627,277 - SM_b20835 0.15 -1.7 627,405 + SM_b20835 0.28 +0.8 627,405 + SM_b20835 0.28 +0.6 627,405 + SM_b20835 0.28 +0.5 627,405 + SM_b20835 0.28 +0.6 627,405 + SM_b20835 0.28 +1.7 627,406 - SM_b20835 0.28 +0.7 627,406 - SM_b20835 0.28 +0.3 627,406 - SM_b20835 0.28 -0.1 627,436 - SM_b20835 0.31 -0.0 627,448 + SM_b20835 0.32 -0.2 627,449 - SM_b20835 0.33 +0.8 627,501 + SM_b20835 0.38 -0.2 627,501 + SM_b20835 0.38 -0.5 627,501 + SM_b20835 0.38 +1.8 627,501 + SM_b20835 0.38 -1.5 627,502 - SM_b20835 0.38 +0.7 627,569 - SM_b20835 0.45 +0.7 627,627 + SM_b20835 0.50 -0.5 627,628 - SM_b20835 0.51 +0.5 627,666 + SM_b20835 0.54 -0.2 627,667 - SM_b20835 0.54 +0.7 627,679 - SM_b20835 0.56 -0.1 627,753 - SM_b20835 0.63 +0.3 627,777 + SM_b20835 0.65 -0.2 627,777 + SM_b20835 0.65 +0.6 627,778 - SM_b20835 0.66 +0.5 627,778 - SM_b20835 0.66 +1.0 627,829 - SM_b20835 0.71 +0.3 627,885 + SM_b20835 0.76 -0.1 627,886 - SM_b20835 0.76 +0.1 627,886 - SM_b20835 0.76 -0.8 627,886 - SM_b20835 0.76 +0.1 628,107 + -0.3 628,130 + +1.3 628,131 - -1.1 628,232 + SM_b20836 0.40 -1.0 628,233 - SM_b20836 0.40 -1.1 628,321 + SM_b20836 0.67 -0.4 628,321 + SM_b20836 0.67 +0.1 628,321 + SM_b20836 0.67 +0.1 628,359 - SM_b20836 0.78 -0.1 628,405 + +0.2 628,476 + -0.9 628,476 + -0.3 628,477 - -0.7 628,477 - +0.0 628,481 + -0.2 628,481 + +0.8 628,481 + +0.2 628,482 - +0.1 628,505 - +0.1 628,644 + +0.4 628,645 - +0.1 628,645 - -0.6 628,697 + -0.5 628,697 + -0.2 628,697 + +0.2 628,697 + -0.6 628,697 + +0.8 628,698 - -0.1 628,698 - -0.1 628,698 - -1.0 628,854 + -0.2 628,855 - +0.2 628,972 + -0.4 628,972 + +0.1 628,972 + +0.1 628,973 - -0.4 628,973 - +0.3 628,973 - +0.5 628,974 + +0.3 629,059 + SM_b20837 0.39 -0.1 629,059 + SM_b20837 0.39 +0.3
Or see this region's nucleotide sequence