Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20709

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20707 and SM_b20708 are separated by 1 nucleotidesSM_b20708 and SM_b20709 are separated by 210 nucleotidesSM_b20709 and SM_b20710 are separated by 495 nucleotides SM_b20707: SM_b20707 - adenylate cyclase, at 1,509,109 to 1,510,371 _b20707 SM_b20708: SM_b20708 - methylated-DNA--protein-cysteine methyltransferase, at 1,510,373 to 1,510,924 _b20708 SM_b20709: SM_b20709 - 3-methyladenine DNA glycosylase, at 1,511,135 to 1,511,692 _b20709 SM_b20710: SM_b20710 - dehydrogenase, at 1,512,188 to 1,513,075 _b20710 Position (kb) 1511 1512Strain fitness (log2 ratio) -1 0 1at 1510.608 kb on + strand, within SM_b20708at 1510.651 kb on - strand, within SM_b20708at 1510.651 kb on - strand, within SM_b20708at 1510.654 kb on + strand, within SM_b20708at 1510.655 kb on - strand, within SM_b20708at 1510.655 kb on - strand, within SM_b20708at 1510.655 kb on - strand, within SM_b20708at 1510.914 kb on + strandat 1510.978 kb on + strandat 1510.978 kb on + strandat 1511.052 kb on - strandat 1511.173 kb on + strandat 1511.241 kb on + strand, within SM_b20709at 1511.342 kb on + strand, within SM_b20709at 1511.342 kb on + strand, within SM_b20709at 1511.342 kb on + strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.439 kb on + strand, within SM_b20709at 1511.481 kb on + strand, within SM_b20709at 1511.481 kb on + strand, within SM_b20709at 1511.482 kb on - strand, within SM_b20709at 1511.482 kb on - strand, within SM_b20709at 1511.896 kb on + strandat 1512.162 kb on + strandat 1512.163 kb on - strandat 1512.163 kb on - strandat 1512.163 kb on - strandat 1512.185 kb on + strandat 1512.186 kb on - strandat 1512.186 kb on - strandat 1512.204 kb on + strandat 1512.204 kb on + strandat 1512.205 kb on - strandat 1512.205 kb on - strandat 1512.205 kb on - strandat 1512.535 kb on + strand, within SM_b20710at 1512.536 kb on - strand, within SM_b20710at 1512.536 kb on - strand, within SM_b20710at 1512.536 kb on - strand, within SM_b20710

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,510,608 + SM_b20708 0.43 -0.2
1,510,651 - SM_b20708 0.50 -0.8
1,510,651 - SM_b20708 0.50 -0.4
1,510,654 + SM_b20708 0.51 -0.2
1,510,655 - SM_b20708 0.51 -0.2
1,510,655 - SM_b20708 0.51 -0.2
1,510,655 - SM_b20708 0.51 -0.1
1,510,914 + -0.2
1,510,978 + +0.7
1,510,978 + -0.2
1,511,052 - -0.3
1,511,173 + +0.2
1,511,241 + SM_b20709 0.19 +0.5
1,511,342 + SM_b20709 0.37 +0.4
1,511,342 + SM_b20709 0.37 +1.5
1,511,342 + SM_b20709 0.37 +0.3
1,511,343 - SM_b20709 0.37 +0.8
1,511,343 - SM_b20709 0.37 -1.3
1,511,343 - SM_b20709 0.37 -0.1
1,511,343 - SM_b20709 0.37 +0.0
1,511,343 - SM_b20709 0.37 -0.4
1,511,349 - SM_b20709 0.38 +0.1
1,511,349 - SM_b20709 0.38 +1.5
1,511,349 - SM_b20709 0.38 +0.6
1,511,349 - SM_b20709 0.38 -0.0
1,511,439 + SM_b20709 0.54 -0.1
1,511,481 + SM_b20709 0.62 +0.4
1,511,481 + SM_b20709 0.62 -0.2
1,511,482 - SM_b20709 0.62 +0.2
1,511,482 - SM_b20709 0.62 +0.5
1,511,896 + -1.6
1,512,162 + -1.0
1,512,163 - +0.0
1,512,163 - +0.7
1,512,163 - +0.0
1,512,185 + -1.1
1,512,186 - -0.1
1,512,186 - +0.9
1,512,204 + -0.8
1,512,204 + -1.2
1,512,205 - -0.2
1,512,205 - -0.6
1,512,205 - -0.1
1,512,535 + SM_b20710 0.39 +0.9
1,512,536 - SM_b20710 0.39 -0.4
1,512,536 - SM_b20710 0.39 +0.2
1,512,536 - SM_b20710 0.39 -0.7

Or see this region's nucleotide sequence