Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20707 and SM_b20708 are separated by 1 nucleotides SM_b20708 and SM_b20709 are separated by 210 nucleotides SM_b20709 and SM_b20710 are separated by 495 nucleotides
SM_b20707: SM_b20707 - adenylate cyclase, at 1,509,109 to 1,510,371
_b20707
SM_b20708: SM_b20708 - methylated-DNA--protein-cysteine methyltransferase, at 1,510,373 to 1,510,924
_b20708
SM_b20709: SM_b20709 - 3-methyladenine DNA glycosylase, at 1,511,135 to 1,511,692
_b20709
SM_b20710: SM_b20710 - dehydrogenase, at 1,512,188 to 1,513,075
_b20710
Position (kb)
1511
1512 Strain fitness (log2 ratio)
-1
0
1 at 1510.608 kb on + strand, within SM_b20708 at 1510.651 kb on - strand, within SM_b20708 at 1510.651 kb on - strand, within SM_b20708 at 1510.654 kb on + strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.914 kb on + strand at 1510.978 kb on + strand at 1510.978 kb on + strand at 1511.052 kb on - strand at 1511.173 kb on + strand at 1511.241 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.439 kb on + strand, within SM_b20709 at 1511.481 kb on + strand, within SM_b20709 at 1511.481 kb on + strand, within SM_b20709 at 1511.482 kb on - strand, within SM_b20709 at 1511.482 kb on - strand, within SM_b20709 at 1511.896 kb on + strand at 1512.162 kb on + strand at 1512.163 kb on - strand at 1512.163 kb on - strand at 1512.163 kb on - strand at 1512.185 kb on + strand at 1512.186 kb on - strand at 1512.186 kb on - strand at 1512.204 kb on + strand at 1512.204 kb on + strand at 1512.205 kb on - strand at 1512.205 kb on - strand at 1512.205 kb on - strand at 1512.535 kb on + strand, within SM_b20710 at 1512.536 kb on - strand, within SM_b20710 at 1512.536 kb on - strand, within SM_b20710 at 1512.536 kb on - strand, within SM_b20710
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,510,608 + SM_b20708 0.43 -0.2 1,510,651 - SM_b20708 0.50 -0.8 1,510,651 - SM_b20708 0.50 -0.4 1,510,654 + SM_b20708 0.51 -0.2 1,510,655 - SM_b20708 0.51 -0.2 1,510,655 - SM_b20708 0.51 -0.2 1,510,655 - SM_b20708 0.51 -0.1 1,510,914 + -0.2 1,510,978 + +0.7 1,510,978 + -0.2 1,511,052 - -0.3 1,511,173 + +0.2 1,511,241 + SM_b20709 0.19 +0.5 1,511,342 + SM_b20709 0.37 +0.4 1,511,342 + SM_b20709 0.37 +1.5 1,511,342 + SM_b20709 0.37 +0.3 1,511,343 - SM_b20709 0.37 +0.8 1,511,343 - SM_b20709 0.37 -1.3 1,511,343 - SM_b20709 0.37 -0.1 1,511,343 - SM_b20709 0.37 +0.0 1,511,343 - SM_b20709 0.37 -0.4 1,511,349 - SM_b20709 0.38 +0.1 1,511,349 - SM_b20709 0.38 +1.5 1,511,349 - SM_b20709 0.38 +0.6 1,511,349 - SM_b20709 0.38 -0.0 1,511,439 + SM_b20709 0.54 -0.1 1,511,481 + SM_b20709 0.62 +0.4 1,511,481 + SM_b20709 0.62 -0.2 1,511,482 - SM_b20709 0.62 +0.2 1,511,482 - SM_b20709 0.62 +0.5 1,511,896 + -1.6 1,512,162 + -1.0 1,512,163 - +0.0 1,512,163 - +0.7 1,512,163 - +0.0 1,512,185 + -1.1 1,512,186 - -0.1 1,512,186 - +0.9 1,512,204 + -0.8 1,512,204 + -1.2 1,512,205 - -0.2 1,512,205 - -0.6 1,512,205 - -0.1 1,512,535 + SM_b20710 0.39 +0.9 1,512,536 - SM_b20710 0.39 -0.4 1,512,536 - SM_b20710 0.39 +0.2 1,512,536 - SM_b20710 0.39 -0.7
Or see this region's nucleotide sequence