Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20654 and SM_b20655 are separated by 193 nucleotides SM_b20655 and SM_b20656 are separated by 270 nucleotides SM_b20656 and SM_b20657 are separated by 38 nucleotides SM_b20657 and SM_b20658 are separated by 7 nucleotides
SM_b20654: SM_b20654 - hypothetical protein, at 1,455,985 to 1,456,380
_b20654
SM_b20655: SM_b20655 - hypothetical protein, at 1,456,574 to 1,457,050
_b20655
SM_b20656: SM_b20656 - oxidoreductase, at 1,457,321 to 1,458,190
_b20656
SM_b20657: SM_b20657 - hypothetical protein, at 1,458,229 to 1,458,885
_b20657
SM_b20658: SM_b20658 - sugar uptake ABC transporter permease, at 1,458,893 to 1,459,792
_b20658
Position (kb)
1457
1458
1459 Strain fitness (log2 ratio)
-2
-1
0
1 at 1456.330 kb on - strand, within SM_b20654 at 1456.371 kb on + strand at 1456.372 kb on - strand at 1456.378 kb on + strand at 1456.416 kb on + strand at 1456.417 kb on - strand at 1456.417 kb on - strand at 1456.487 kb on + strand at 1456.585 kb on + strand at 1456.635 kb on - strand, within SM_b20655 at 1456.635 kb on - strand, within SM_b20655 at 1456.797 kb on - strand, within SM_b20655 at 1457.008 kb on - strand at 1457.008 kb on - strand at 1457.049 kb on - strand at 1457.054 kb on + strand at 1457.108 kb on - strand at 1457.320 kb on + strand at 1457.320 kb on + strand at 1457.321 kb on - strand at 1457.321 kb on - strand at 1457.457 kb on + strand, within SM_b20656 at 1457.667 kb on - strand, within SM_b20656 at 1457.667 kb on - strand, within SM_b20656 at 1457.771 kb on + strand, within SM_b20656 at 1457.772 kb on - strand, within SM_b20656 at 1457.861 kb on + strand, within SM_b20656 at 1457.862 kb on - strand, within SM_b20656 at 1457.862 kb on - strand, within SM_b20656 at 1457.862 kb on - strand, within SM_b20656 at 1457.867 kb on - strand, within SM_b20656 at 1457.867 kb on - strand, within SM_b20656 at 1458.105 kb on + strand at 1458.173 kb on + strand at 1458.174 kb on - strand at 1458.247 kb on + strand at 1458.466 kb on + strand, within SM_b20657 at 1458.477 kb on + strand, within SM_b20657 at 1458.477 kb on + strand, within SM_b20657 at 1458.478 kb on - strand, within SM_b20657 at 1458.927 kb on + strand at 1458.927 kb on + strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.930 kb on + strand at 1458.931 kb on - strand at 1458.931 kb on - strand at 1458.948 kb on + strand at 1458.949 kb on - strand at 1458.949 kb on - strand at 1459.089 kb on + strand, within SM_b20658
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,456,330 - SM_b20654 0.87 -0.3 1,456,371 + +0.5 1,456,372 - -0.4 1,456,378 + -0.0 1,456,416 + -0.1 1,456,417 - +0.8 1,456,417 - +0.4 1,456,487 + +0.1 1,456,585 + +0.5 1,456,635 - SM_b20655 0.13 -1.2 1,456,635 - SM_b20655 0.13 +0.9 1,456,797 - SM_b20655 0.47 -0.8 1,457,008 - -0.3 1,457,008 - -1.9 1,457,049 - -0.1 1,457,054 + +1.1 1,457,108 - -0.1 1,457,320 + -0.4 1,457,320 + +0.2 1,457,321 - +0.3 1,457,321 - -0.4 1,457,457 + SM_b20656 0.16 -0.2 1,457,667 - SM_b20656 0.40 +0.9 1,457,667 - SM_b20656 0.40 +0.2 1,457,771 + SM_b20656 0.52 +0.3 1,457,772 - SM_b20656 0.52 +0.7 1,457,861 + SM_b20656 0.62 +1.6 1,457,862 - SM_b20656 0.62 +0.4 1,457,862 - SM_b20656 0.62 -1.0 1,457,862 - SM_b20656 0.62 -0.2 1,457,867 - SM_b20656 0.63 -0.0 1,457,867 - SM_b20656 0.63 -0.9 1,458,105 + -0.2 1,458,173 + -0.7 1,458,174 - +0.4 1,458,247 + +0.9 1,458,466 + SM_b20657 0.36 -0.9 1,458,477 + SM_b20657 0.38 -0.3 1,458,477 + SM_b20657 0.38 -0.9 1,458,478 - SM_b20657 0.38 +0.7 1,458,927 + +1.2 1,458,927 + -0.4 1,458,928 - -0.1 1,458,928 - +0.8 1,458,928 - +0.8 1,458,928 - +0.4 1,458,930 + -0.9 1,458,931 - +0.8 1,458,931 - -0.4 1,458,948 + +0.4 1,458,949 - +1.5 1,458,949 - +0.7 1,459,089 + SM_b20658 0.22 +1.7
Or see this region's nucleotide sequence