Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20534 and SM_b20535 overlap by 4 nucleotides SM_b20535 and SM_b20536 overlap by 4 nucleotides
SM_b20534: SM_b20534 - hypothetical protein, at 557,553 to 558,362
_b20534
SM_b20535: SM_b20535 - dehydrogenase, at 558,359 to 559,369
_b20535
SM_b20536: SM_b20536 - hypothetical protein, at 559,366 to 561,219
_b20536
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 557.392 kb on + strand at 557.393 kb on - strand at 557.393 kb on - strand at 557.434 kb on - strand at 557.440 kb on + strand at 557.440 kb on + strand at 557.440 kb on + strand at 557.440 kb on + strand at 557.441 kb on - strand at 557.441 kb on - strand at 557.441 kb on - strand at 557.441 kb on - strand at 557.490 kb on + strand at 557.490 kb on + strand at 557.491 kb on - strand at 557.491 kb on - strand at 557.529 kb on + strand at 557.529 kb on + strand at 557.561 kb on + strand at 557.731 kb on + strand, within SM_b20534 at 557.870 kb on - strand, within SM_b20534 at 557.875 kb on + strand, within SM_b20534 at 557.875 kb on + strand, within SM_b20534 at 557.875 kb on + strand, within SM_b20534 at 557.876 kb on - strand, within SM_b20534 at 557.876 kb on - strand, within SM_b20534 at 557.876 kb on - strand, within SM_b20534 at 557.902 kb on - strand, within SM_b20534 at 557.903 kb on + strand, within SM_b20534 at 557.903 kb on + strand, within SM_b20534 at 557.904 kb on - strand, within SM_b20534 at 558.041 kb on - strand, within SM_b20534 at 558.160 kb on + strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.169 kb on + strand, within SM_b20534 at 558.170 kb on - strand, within SM_b20534 at 558.170 kb on - strand, within SM_b20534 at 558.487 kb on + strand, within SM_b20535 at 558.503 kb on + strand, within SM_b20535 at 558.519 kb on + strand, within SM_b20535 at 558.520 kb on - strand, within SM_b20535 at 558.665 kb on - strand, within SM_b20535 at 558.754 kb on + strand, within SM_b20535 at 558.755 kb on - strand, within SM_b20535 at 558.755 kb on - strand, within SM_b20535 at 558.774 kb on - strand, within SM_b20535 at 558.816 kb on + strand, within SM_b20535 at 558.816 kb on + strand, within SM_b20535 at 558.966 kb on + strand, within SM_b20535 at 558.966 kb on + strand, within SM_b20535 at 559.321 kb on - strand at 559.869 kb on + strand, within SM_b20536 at 559.998 kb on - strand, within SM_b20536 at 560.128 kb on + strand, within SM_b20536 at 560.129 kb on - strand, within SM_b20536 at 560.225 kb on + strand, within SM_b20536 at 560.225 kb on + strand, within SM_b20536 at 560.259 kb on + strand, within SM_b20536 at 560.260 kb on - strand, within SM_b20536
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 557,392 + +0.3 557,393 - +0.1 557,393 - +0.4 557,434 - +0.8 557,440 + -0.2 557,440 + -0.3 557,440 + -0.2 557,440 + -0.3 557,441 - -0.3 557,441 - -0.3 557,441 - +1.3 557,441 - +0.5 557,490 + +0.5 557,490 + -0.4 557,491 - -0.0 557,491 - -1.6 557,529 + -0.6 557,529 + -0.1 557,561 + -1.1 557,731 + SM_b20534 0.22 +0.1 557,870 - SM_b20534 0.39 +0.5 557,875 + SM_b20534 0.40 -0.6 557,875 + SM_b20534 0.40 -1.0 557,875 + SM_b20534 0.40 +0.7 557,876 - SM_b20534 0.40 +0.1 557,876 - SM_b20534 0.40 +2.0 557,876 - SM_b20534 0.40 +0.5 557,902 - SM_b20534 0.43 -0.7 557,903 + SM_b20534 0.43 +0.2 557,903 + SM_b20534 0.43 +0.2 557,904 - SM_b20534 0.43 +0.5 558,041 - SM_b20534 0.60 -0.7 558,160 + SM_b20534 0.75 -0.2 558,161 - SM_b20534 0.75 +1.3 558,161 - SM_b20534 0.75 -2.2 558,161 - SM_b20534 0.75 +0.7 558,161 - SM_b20534 0.75 +0.7 558,169 + SM_b20534 0.76 +1.0 558,170 - SM_b20534 0.76 +1.5 558,170 - SM_b20534 0.76 -0.3 558,487 + SM_b20535 0.13 -0.9 558,503 + SM_b20535 0.14 -1.0 558,519 + SM_b20535 0.16 -0.3 558,520 - SM_b20535 0.16 -1.0 558,665 - SM_b20535 0.30 +0.7 558,754 + SM_b20535 0.39 -0.3 558,755 - SM_b20535 0.39 -1.6 558,755 - SM_b20535 0.39 +0.2 558,774 - SM_b20535 0.41 -0.5 558,816 + SM_b20535 0.45 -0.0 558,816 + SM_b20535 0.45 -0.1 558,966 + SM_b20535 0.60 +1.3 558,966 + SM_b20535 0.60 +0.1 559,321 - -0.0 559,869 + SM_b20536 0.27 +0.0 559,998 - SM_b20536 0.34 -2.5 560,128 + SM_b20536 0.41 +1.6 560,129 - SM_b20536 0.41 +0.0 560,225 + SM_b20536 0.46 +3.1 560,225 + SM_b20536 0.46 +0.3 560,259 + SM_b20536 0.48 +0.0 560,260 - SM_b20536 0.48 -0.3
Or see this region's nucleotide sequence