Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20489 and SM_b20490 overlap by 8 nucleotides SM_b20490 and SM_b22020 are separated by 107 nucleotides
SM_b20489: SM_b20489 - carbohydrate kinase, at 505,347 to 506,819
_b20489
SM_b20490: SM_b20490 - L-fuculose phosphate aldolase, at 506,812 to 507,510
_b20490
SM_b22020: SM_b22020 - hypothetical protein, at 507,618 to 508,478
_b22020
Position (kb) 506
507
508 Strain fitness (log2 ratio) -2
-1
0
1
2 at 505.822 kb on - strand, within SM_b20489 at 505.822 kb on - strand, within SM_b20489 at 505.840 kb on - strand, within SM_b20489 at 506.084 kb on - strand, within SM_b20489 at 506.245 kb on + strand, within SM_b20489 at 506.467 kb on - strand, within SM_b20489 at 506.467 kb on - strand, within SM_b20489 at 506.467 kb on - strand, within SM_b20489 at 506.616 kb on + strand, within SM_b20489 at 506.617 kb on - strand, within SM_b20489 at 506.965 kb on + strand, within SM_b20490 at 506.966 kb on - strand, within SM_b20490 at 507.016 kb on + strand, within SM_b20490 at 507.016 kb on + strand, within SM_b20490 at 507.016 kb on + strand, within SM_b20490 at 507.016 kb on + strand, within SM_b20490 at 507.016 kb on + strand, within SM_b20490 at 507.017 kb on - strand, within SM_b20490 at 507.017 kb on - strand, within SM_b20490 at 507.017 kb on - strand, within SM_b20490 at 507.017 kb on - strand, within SM_b20490 at 507.017 kb on - strand, within SM_b20490 at 507.112 kb on + strand, within SM_b20490 at 507.113 kb on - strand, within SM_b20490 at 507.160 kb on + strand, within SM_b20490 at 507.160 kb on + strand, within SM_b20490 at 507.205 kb on + strand, within SM_b20490 at 507.296 kb on + strand, within SM_b20490 at 507.364 kb on + strand, within SM_b20490 at 507.364 kb on + strand, within SM_b20490 at 507.365 kb on - strand, within SM_b20490 at 507.365 kb on - strand, within SM_b20490 at 507.365 kb on - strand, within SM_b20490 at 507.365 kb on - strand, within SM_b20490 at 507.619 kb on + strand at 507.620 kb on - strand at 507.620 kb on - strand at 507.628 kb on + strand at 507.771 kb on - strand, within SM_b22020 at 507.775 kb on - strand, within SM_b22020 at 507.775 kb on - strand, within SM_b22020 at 507.844 kb on + strand, within SM_b22020 at 507.844 kb on + strand, within SM_b22020 at 507.845 kb on - strand, within SM_b22020 at 507.845 kb on - strand, within SM_b22020 at 507.860 kb on + strand, within SM_b22020 at 507.861 kb on - strand, within SM_b22020 at 507.861 kb on - strand, within SM_b22020 at 507.861 kb on - strand, within SM_b22020 at 507.976 kb on - strand, within SM_b22020 at 507.976 kb on - strand, within SM_b22020 at 508.016 kb on + strand, within SM_b22020 at 508.017 kb on - strand, within SM_b22020 at 508.017 kb on - strand, within SM_b22020 at 508.109 kb on + strand, within SM_b22020 at 508.109 kb on + strand, within SM_b22020 at 508.109 kb on + strand, within SM_b22020 at 508.109 kb on + strand, within SM_b22020 at 508.109 kb on + strand, within SM_b22020 at 508.110 kb on - strand, within SM_b22020 at 508.110 kb on - strand, within SM_b22020 at 508.110 kb on - strand, within SM_b22020 at 508.110 kb on - strand, within SM_b22020 at 508.111 kb on + strand, within SM_b22020 at 508.111 kb on + strand, within SM_b22020 at 508.111 kb on + strand, within SM_b22020 at 508.111 kb on + strand, within SM_b22020 at 508.112 kb on - strand, within SM_b22020 at 508.112 kb on - strand, within SM_b22020 at 508.112 kb on - strand, within SM_b22020 at 508.112 kb on - strand, within SM_b22020 at 508.117 kb on + strand, within SM_b22020 at 508.118 kb on - strand, within SM_b22020 at 508.207 kb on + strand, within SM_b22020 at 508.322 kb on - strand, within SM_b22020 at 508.322 kb on - strand, within SM_b22020 at 508.348 kb on - strand, within SM_b22020 at 508.389 kb on + strand, within SM_b22020
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 505,822 - SM_b20489 0.32 -1.2 505,822 - SM_b20489 0.32 -2.2 505,840 - SM_b20489 0.33 +0.8 506,084 - SM_b20489 0.50 -0.4 506,245 + SM_b20489 0.61 +0.6 506,467 - SM_b20489 0.76 +0.7 506,467 - SM_b20489 0.76 +0.2 506,467 - SM_b20489 0.76 +1.3 506,616 + SM_b20489 0.86 +0.3 506,617 - SM_b20489 0.86 +0.4 506,965 + SM_b20490 0.22 +2.0 506,966 - SM_b20490 0.22 +0.5 507,016 + SM_b20490 0.29 +0.5 507,016 + SM_b20490 0.29 -0.5 507,016 + SM_b20490 0.29 +0.3 507,016 + SM_b20490 0.29 -0.4 507,016 + SM_b20490 0.29 +0.0 507,017 - SM_b20490 0.29 +0.3 507,017 - SM_b20490 0.29 +0.3 507,017 - SM_b20490 0.29 +0.9 507,017 - SM_b20490 0.29 +0.5 507,017 - SM_b20490 0.29 +0.5 507,112 + SM_b20490 0.43 -0.2 507,113 - SM_b20490 0.43 -0.1 507,160 + SM_b20490 0.50 -0.7 507,160 + SM_b20490 0.50 +0.5 507,205 + SM_b20490 0.56 -0.6 507,296 + SM_b20490 0.69 +0.2 507,364 + SM_b20490 0.79 +0.4 507,364 + SM_b20490 0.79 -0.5 507,365 - SM_b20490 0.79 +0.1 507,365 - SM_b20490 0.79 +1.3 507,365 - SM_b20490 0.79 +0.4 507,365 - SM_b20490 0.79 -1.8 507,619 + -0.4 507,620 - -0.4 507,620 - +0.6 507,628 + +0.9 507,771 - SM_b22020 0.18 -0.3 507,775 - SM_b22020 0.18 -0.3 507,775 - SM_b22020 0.18 -0.6 507,844 + SM_b22020 0.26 -0.7 507,844 + SM_b22020 0.26 +0.5 507,845 - SM_b22020 0.26 -0.2 507,845 - SM_b22020 0.26 -0.2 507,860 + SM_b22020 0.28 -1.2 507,861 - SM_b22020 0.28 -0.2 507,861 - SM_b22020 0.28 -1.3 507,861 - SM_b22020 0.28 -0.7 507,976 - SM_b22020 0.42 -0.7 507,976 - SM_b22020 0.42 +0.5 508,016 + SM_b22020 0.46 +1.6 508,017 - SM_b22020 0.46 -0.2 508,017 - SM_b22020 0.46 -0.7 508,109 + SM_b22020 0.57 -0.1 508,109 + SM_b22020 0.57 +0.7 508,109 + SM_b22020 0.57 +0.7 508,109 + SM_b22020 0.57 -1.7 508,109 + SM_b22020 0.57 -0.2 508,110 - SM_b22020 0.57 +0.0 508,110 - SM_b22020 0.57 +0.3 508,110 - SM_b22020 0.57 +0.0 508,110 - SM_b22020 0.57 +0.4 508,111 + SM_b22020 0.57 +1.3 508,111 + SM_b22020 0.57 +0.1 508,111 + SM_b22020 0.57 +0.4 508,111 + SM_b22020 0.57 -0.3 508,112 - SM_b22020 0.57 -0.2 508,112 - SM_b22020 0.57 +2.1 508,112 - SM_b22020 0.57 -0.7 508,112 - SM_b22020 0.57 -0.1 508,117 + SM_b22020 0.58 -0.6 508,118 - SM_b22020 0.58 -1.3 508,207 + SM_b22020 0.68 +0.0 508,322 - SM_b22020 0.82 -0.3 508,322 - SM_b22020 0.82 +0.4 508,348 - SM_b22020 0.85 -0.2 508,389 + SM_b22020 0.90 +0.5
Or see this region's nucleotide sequence