Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20445 and SM_b20446 are separated by 9 nucleotides SM_b20446 and SM_b20447 are separated by 275 nucleotides
SM_b20445: SM_b20445 - alcohol dehydrogenase, at 456,313 to 457,371
_b20445
SM_b20446: SM_b20446 - mannonate dehydratase, at 457,381 to 458,589
_b20446
SM_b20447: SM_b20447 - hypothetical protein, at 458,865 to 460,559
_b20447
Position (kb) 457
458
459 Strain fitness (log2 ratio) -1
0
1
2 at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.463 kb on + strand, within SM_b20445 at 456.509 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.848 kb on + strand, within SM_b20445 at 456.849 kb on - strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.082 kb on + strand, within SM_b20445 at 457.149 kb on + strand, within SM_b20445 at 457.150 kb on - strand, within SM_b20445 at 457.389 kb on + strand at 457.389 kb on + strand at 457.389 kb on + strand at 457.389 kb on + strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.685 kb on - strand, within SM_b20446 at 457.829 kb on - strand, within SM_b20446 at 457.909 kb on - strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446 at 458.563 kb on + strand at 458.564 kb on - strand at 458.564 kb on - strand at 458.564 kb on - strand at 458.602 kb on + strand at 458.616 kb on - strand at 458.677 kb on - strand at 458.805 kb on + strand at 458.815 kb on + strand at 458.950 kb on - strand at 459.042 kb on + strand, within SM_b20447 at 459.042 kb on + strand, within SM_b20447 at 459.043 kb on - strand, within SM_b20447 at 459.213 kb on + strand, within SM_b20447 at 459.259 kb on + strand, within SM_b20447 at 459.259 kb on + strand, within SM_b20447 at 459.260 kb on - strand, within SM_b20447 at 459.490 kb on - strand, within SM_b20447 at 459.497 kb on - strand, within SM_b20447
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 456,461 - SM_b20445 0.14 -0.2 456,461 - SM_b20445 0.14 -1.0 456,461 - SM_b20445 0.14 -0.2 456,463 + SM_b20445 0.14 -0.1 456,509 + SM_b20445 0.19 -0.2 456,702 + SM_b20445 0.37 +0.4 456,702 + SM_b20445 0.37 -0.6 456,702 + SM_b20445 0.37 +0.3 456,702 + SM_b20445 0.37 -0.1 456,702 + SM_b20445 0.37 -1.1 456,848 + SM_b20445 0.51 +0.1 456,849 - SM_b20445 0.51 +0.5 457,021 + SM_b20445 0.67 +1.1 457,021 + SM_b20445 0.67 +2.3 457,082 + SM_b20445 0.73 -0.3 457,149 + SM_b20445 0.79 +0.1 457,150 - SM_b20445 0.79 +0.8 457,389 + -1.1 457,389 + +1.2 457,389 + -0.3 457,389 + +0.8 457,390 - +1.3 457,390 - +0.1 457,390 - -0.1 457,390 - +0.2 457,685 - SM_b20446 0.25 -1.2 457,829 - SM_b20446 0.37 -0.3 457,909 - SM_b20446 0.44 -0.6 457,978 + SM_b20446 0.49 -0.3 457,978 + SM_b20446 0.49 -0.6 457,978 + SM_b20446 0.49 +0.3 457,978 + SM_b20446 0.49 -1.0 457,978 + SM_b20446 0.49 +1.0 457,978 + SM_b20446 0.49 -0.3 457,979 - SM_b20446 0.49 -0.5 457,979 - SM_b20446 0.49 -0.1 458,140 + SM_b20446 0.63 +0.5 458,140 + SM_b20446 0.63 +0.5 458,300 + SM_b20446 0.76 -1.1 458,300 + SM_b20446 0.76 -1.4 458,301 - SM_b20446 0.76 -0.0 458,301 - SM_b20446 0.76 +0.6 458,563 + +0.5 458,564 - +1.6 458,564 - +0.0 458,564 - +0.2 458,602 + -1.0 458,616 - -0.2 458,677 - +0.5 458,805 + +0.8 458,815 + +0.6 458,950 - -0.2 459,042 + SM_b20447 0.10 -1.4 459,042 + SM_b20447 0.10 -0.0 459,043 - SM_b20447 0.11 -0.0 459,213 + SM_b20447 0.21 -0.8 459,259 + SM_b20447 0.23 -0.3 459,259 + SM_b20447 0.23 +2.3 459,260 - SM_b20447 0.23 -1.4 459,490 - SM_b20447 0.37 -1.3 459,497 - SM_b20447 0.37 +0.3
Or see this region's nucleotide sequence