Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20408 and SM_b20409 overlap by 4 nucleotides SM_b20409 and SM_b20410 are separated by 68 nucleotides SM_b20410 and SM_b20411 are separated by 15 nucleotides SM_b20411 and SM_b20412 are separated by 30 nucleotides SM_b20412 and SM_b20413 overlap by 4 nucleotides SM_b20413 and SM_b20414 are separated by 180 nucleotides
SM_b20408: SM_b20408 - hypothetical protein, at 424,347 to 424,844
_b20408
SM_b20409: SM_b20409 - 3-oxoacyl-ACP reductase, at 424,841 to 425,671
_b20409
SM_b20410: SM_b20410 - glycine-betaine-binding protein, at 425,740 to 426,678
_b20410
SM_b20411: SM_b20411 - hypothetical protein, at 426,694 to 426,942
_b20411
SM_b20412: SM_b20412 - hypothetical protein, at 426,973 to 427,137
_b20412
SM_b20413: SM_b20413 - hypothetical protein, at 427,134 to 427,361
_b20413
SM_b20414: SM_b20414 - hypothetical protein, at 427,542 to 428,015
_b20414
Position (kb) 425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2 at 424.948 kb on - strand, within SM_b20409 at 424.948 kb on - strand, within SM_b20409 at 425.061 kb on - strand, within SM_b20409 at 425.061 kb on - strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.206 kb on - strand, within SM_b20409 at 425.206 kb on - strand, within SM_b20409 at 425.305 kb on + strand, within SM_b20409 at 425.305 kb on + strand, within SM_b20409 at 425.306 kb on - strand, within SM_b20409 at 425.307 kb on + strand, within SM_b20409 at 425.308 kb on - strand, within SM_b20409 at 425.308 kb on - strand, within SM_b20409 at 425.351 kb on + strand, within SM_b20409 at 425.577 kb on - strand, within SM_b20409 at 425.643 kb on + strand at 425.643 kb on + strand at 425.643 kb on + strand at 425.643 kb on + strand at 425.644 kb on - strand at 425.644 kb on - strand at 425.711 kb on + strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.720 kb on + strand at 425.720 kb on + strand at 425.720 kb on + strand at 425.721 kb on - strand at 425.900 kb on + strand, within SM_b20410 at 425.906 kb on - strand, within SM_b20410 at 425.927 kb on + strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.944 kb on + strand, within SM_b20410 at 425.944 kb on + strand, within SM_b20410 at 425.945 kb on - strand, within SM_b20410 at 426.077 kb on - strand, within SM_b20410 at 426.077 kb on - strand, within SM_b20410 at 426.097 kb on + strand, within SM_b20410 at 426.097 kb on + strand, within SM_b20410 at 426.098 kb on - strand, within SM_b20410 at 426.373 kb on + strand, within SM_b20410 at 426.373 kb on + strand, within SM_b20410 at 426.374 kb on - strand, within SM_b20410 at 426.409 kb on + strand, within SM_b20410 at 426.423 kb on + strand, within SM_b20410 at 426.423 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.428 kb on - strand, within SM_b20410 at 426.428 kb on - strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.465 kb on + strand, within SM_b20410 at 426.465 kb on + strand, within SM_b20410 at 426.466 kb on - strand, within SM_b20410 at 426.466 kb on - strand, within SM_b20410 at 426.702 kb on + strand at 426.815 kb on + strand, within SM_b20411 at 426.816 kb on - strand, within SM_b20411 at 426.816 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 427.081 kb on + strand, within SM_b20412 at 427.081 kb on + strand, within SM_b20412 at 427.083 kb on + strand, within SM_b20412 at 427.084 kb on - strand, within SM_b20412 at 427.215 kb on + strand, within SM_b20413 at 427.397 kb on + strand at 427.397 kb on + strand at 427.646 kb on - strand, within SM_b20414
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 424,948 - SM_b20409 0.13 -0.4 424,948 - SM_b20409 0.13 +0.9 425,061 - SM_b20409 0.26 +0.0 425,061 - SM_b20409 0.26 +0.3 425,205 + SM_b20409 0.44 +0.1 425,205 + SM_b20409 0.44 +0.8 425,205 + SM_b20409 0.44 +0.4 425,206 - SM_b20409 0.44 -0.1 425,206 - SM_b20409 0.44 -0.2 425,305 + SM_b20409 0.56 -0.3 425,305 + SM_b20409 0.56 -0.6 425,306 - SM_b20409 0.56 -0.0 425,307 + SM_b20409 0.56 +1.9 425,308 - SM_b20409 0.56 -0.8 425,308 - SM_b20409 0.56 -1.9 425,351 + SM_b20409 0.61 -0.4 425,577 - SM_b20409 0.89 +0.6 425,643 + +0.2 425,643 + -0.8 425,643 + +0.4 425,643 + -0.3 425,644 - -1.5 425,644 - -0.1 425,711 + +1.2 425,712 - -1.7 425,712 - -0.6 425,712 - -0.6 425,712 - +0.0 425,712 - +0.5 425,720 + +0.8 425,720 + -1.4 425,720 + +0.4 425,721 - +0.0 425,900 + SM_b20410 0.17 -0.2 425,906 - SM_b20410 0.18 -0.4 425,927 + SM_b20410 0.20 -1.2 425,928 - SM_b20410 0.20 +0.6 425,928 - SM_b20410 0.20 -1.6 425,928 - SM_b20410 0.20 +0.1 425,928 - SM_b20410 0.20 +0.2 425,928 - SM_b20410 0.20 -1.0 425,928 - SM_b20410 0.20 -0.6 425,944 + SM_b20410 0.22 -1.1 425,944 + SM_b20410 0.22 +0.0 425,945 - SM_b20410 0.22 +2.1 426,077 - SM_b20410 0.36 +0.3 426,077 - SM_b20410 0.36 -0.1 426,097 + SM_b20410 0.38 +0.5 426,097 + SM_b20410 0.38 -0.4 426,098 - SM_b20410 0.38 -2.7 426,373 + SM_b20410 0.67 -0.4 426,373 + SM_b20410 0.67 +1.0 426,374 - SM_b20410 0.68 -0.2 426,409 + SM_b20410 0.71 +0.6 426,423 + SM_b20410 0.73 -1.6 426,423 + SM_b20410 0.73 -0.5 426,427 + SM_b20410 0.73 -0.7 426,427 + SM_b20410 0.73 +1.7 426,427 + SM_b20410 0.73 -0.3 426,427 + SM_b20410 0.73 -0.8 426,427 + SM_b20410 0.73 -0.1 426,427 + SM_b20410 0.73 -0.4 426,428 - SM_b20410 0.73 -0.2 426,428 - SM_b20410 0.73 -0.4 426,429 + SM_b20410 0.73 +0.0 426,429 + SM_b20410 0.73 +0.7 426,429 + SM_b20410 0.73 -0.6 426,465 + SM_b20410 0.77 -0.3 426,465 + SM_b20410 0.77 +0.5 426,466 - SM_b20410 0.77 +0.1 426,466 - SM_b20410 0.77 +0.1 426,702 + +0.2 426,815 + SM_b20411 0.49 -0.7 426,816 - SM_b20411 0.49 +0.2 426,816 - SM_b20411 0.49 -0.1 426,862 - SM_b20411 0.67 +0.6 426,862 - SM_b20411 0.67 +1.0 426,862 - SM_b20411 0.67 -0.2 427,081 + SM_b20412 0.65 -1.1 427,081 + SM_b20412 0.65 -0.1 427,083 + SM_b20412 0.67 -0.9 427,084 - SM_b20412 0.67 +0.5 427,215 + SM_b20413 0.36 +0.1 427,397 + -0.1 427,397 + +0.5 427,646 - SM_b20414 0.22 -0.1
Or see this region's nucleotide sequence