Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20393 and SM_b20394 are separated by 23 nucleotides SM_b20394 and SM_b20395 are separated by 39 nucleotides
SM_b20393: SM_b20393 - ribulose bisphosphate carboxylaseoxygenase, large subunit protein, at 406,532 to 407,788
_b20393
SM_b20394: SM_b20394 - hypothetical protein, at 407,812 to 409,140
_b20394
SM_b20395: SM_b20395 - dehydrogenase, at 409,180 to 411,429
_b20395
Position (kb) 407
408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 406.836 kb on - strand, within SM_b20393 at 406.836 kb on - strand, within SM_b20393 at 406.836 kb on - strand, within SM_b20393 at 407.055 kb on - strand, within SM_b20393 at 407.174 kb on + strand, within SM_b20393 at 407.174 kb on + strand, within SM_b20393 at 407.175 kb on - strand, within SM_b20393 at 407.187 kb on + strand, within SM_b20393 at 407.188 kb on - strand, within SM_b20393 at 407.582 kb on + strand, within SM_b20393 at 407.582 kb on + strand, within SM_b20393 at 407.582 kb on + strand, within SM_b20393 at 407.583 kb on - strand, within SM_b20393 at 407.615 kb on + strand, within SM_b20393 at 407.615 kb on + strand, within SM_b20393 at 407.676 kb on + strand at 407.677 kb on - strand at 407.723 kb on + strand at 407.834 kb on - strand at 407.836 kb on + strand at 407.836 kb on + strand at 408.067 kb on + strand, within SM_b20394 at 408.068 kb on - strand, within SM_b20394 at 408.068 kb on - strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.114 kb on - strand, within SM_b20394 at 408.241 kb on + strand, within SM_b20394 at 408.350 kb on + strand, within SM_b20394 at 408.350 kb on + strand, within SM_b20394 at 408.351 kb on - strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.530 kb on - strand, within SM_b20394 at 408.530 kb on - strand, within SM_b20394 at 408.797 kb on - strand, within SM_b20394 at 408.946 kb on - strand, within SM_b20394 at 408.987 kb on + strand, within SM_b20394 at 408.988 kb on - strand, within SM_b20394 at 408.988 kb on - strand, within SM_b20394 at 409.041 kb on + strand at 409.109 kb on - strand at 409.183 kb on + strand at 409.273 kb on + strand at 409.274 kb on - strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.312 kb on - strand at 409.312 kb on - strand at 409.334 kb on + strand at 409.334 kb on + strand at 409.334 kb on + strand at 409.379 kb on + strand at 409.694 kb on + strand, within SM_b20395 at 409.694 kb on + strand, within SM_b20395 at 409.863 kb on + strand, within SM_b20395 at 409.863 kb on + strand, within SM_b20395 at 410.079 kb on - strand, within SM_b20395 at 410.079 kb on - strand, within SM_b20395 at 410.079 kb on - strand, within SM_b20395
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 406,836 - SM_b20393 0.24 +0.8 406,836 - SM_b20393 0.24 -0.2 406,836 - SM_b20393 0.24 +0.2 407,055 - SM_b20393 0.42 -0.3 407,174 + SM_b20393 0.51 -0.9 407,174 + SM_b20393 0.51 -0.1 407,175 - SM_b20393 0.51 +1.5 407,187 + SM_b20393 0.52 -0.1 407,188 - SM_b20393 0.52 -0.0 407,582 + SM_b20393 0.84 -0.5 407,582 + SM_b20393 0.84 -0.5 407,582 + SM_b20393 0.84 -0.1 407,583 - SM_b20393 0.84 +0.2 407,615 + SM_b20393 0.86 -1.4 407,615 + SM_b20393 0.86 +0.8 407,676 + +0.2 407,677 - -0.2 407,723 + -1.0 407,834 - +0.2 407,836 + -1.3 407,836 + +0.3 408,067 + SM_b20394 0.19 +0.0 408,068 - SM_b20394 0.19 -0.5 408,068 - SM_b20394 0.19 +0.1 408,113 + SM_b20394 0.23 -0.3 408,113 + SM_b20394 0.23 -1.3 408,113 + SM_b20394 0.23 -0.3 408,113 + SM_b20394 0.23 -0.0 408,113 + SM_b20394 0.23 -0.5 408,114 - SM_b20394 0.23 +0.3 408,241 + SM_b20394 0.32 -0.4 408,350 + SM_b20394 0.40 -0.6 408,350 + SM_b20394 0.40 +1.6 408,351 - SM_b20394 0.41 -0.7 408,529 + SM_b20394 0.54 -0.2 408,529 + SM_b20394 0.54 -1.1 408,529 + SM_b20394 0.54 +0.5 408,529 + SM_b20394 0.54 -0.2 408,529 + SM_b20394 0.54 -1.0 408,529 + SM_b20394 0.54 -0.1 408,530 - SM_b20394 0.54 -0.1 408,530 - SM_b20394 0.54 +0.9 408,797 - SM_b20394 0.74 -0.9 408,946 - SM_b20394 0.85 +0.3 408,987 + SM_b20394 0.88 +0.8 408,988 - SM_b20394 0.88 -0.6 408,988 - SM_b20394 0.88 -0.8 409,041 + -0.5 409,109 - -0.2 409,183 + -0.2 409,273 + -1.0 409,274 - -0.6 409,311 + -0.2 409,311 + +0.3 409,311 + -0.1 409,311 + -1.7 409,311 + -0.6 409,312 - +0.0 409,312 - +0.1 409,334 + +1.1 409,334 + -3.0 409,334 + +0.2 409,379 + -0.2 409,694 + SM_b20395 0.23 +0.4 409,694 + SM_b20395 0.23 -0.6 409,863 + SM_b20395 0.30 +1.9 409,863 + SM_b20395 0.30 -0.3 410,079 - SM_b20395 0.40 -0.1 410,079 - SM_b20395 0.40 -0.0 410,079 - SM_b20395 0.40 +0.3
Or see this region's nucleotide sequence