Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20388 and SM_b20389 are separated by 14 nucleotides SM_b20389 and SM_b20390 are separated by 435 nucleotides
SM_b20388: SM_b20388 - NADPH:quinone oxidoreductase, at 399,980 to 400,960
_b20388
SM_b20389: SM_b20389 - hypothetical protein, at 400,975 to 402,000
_b20389
SM_b20390: SM_b20390 - hypothetical protein, at 402,436 to 403,668
_b20390
Position (kb) 400
401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 399.981 kb on + strand at 399.981 kb on + strand at 399.982 kb on - strand at 400.066 kb on - strand at 400.066 kb on - strand at 400.158 kb on + strand, within SM_b20388 at 400.158 kb on + strand, within SM_b20388 at 400.159 kb on - strand, within SM_b20388 at 400.193 kb on + strand, within SM_b20388 at 400.220 kb on + strand, within SM_b20388 at 400.228 kb on + strand, within SM_b20388 at 400.228 kb on + strand, within SM_b20388 at 400.265 kb on + strand, within SM_b20388 at 400.311 kb on - strand at 400.377 kb on + strand, within SM_b20388 at 400.378 kb on - strand, within SM_b20388 at 400.450 kb on + strand, within SM_b20388 at 400.451 kb on - strand, within SM_b20388 at 400.464 kb on + strand, within SM_b20388 at 400.489 kb on - strand, within SM_b20388 at 400.539 kb on - strand, within SM_b20388 at 400.613 kb on + strand, within SM_b20388 at 400.614 kb on - strand, within SM_b20388 at 400.614 kb on - strand, within SM_b20388 at 400.615 kb on - strand, within SM_b20388 at 400.659 kb on + strand, within SM_b20388 at 400.659 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.857 kb on - strand, within SM_b20388 at 400.857 kb on - strand, within SM_b20388 at 400.857 kb on - strand, within SM_b20388 at 401.643 kb on - strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.771 kb on - strand, within SM_b20389 at 401.771 kb on - strand, within SM_b20389 at 401.862 kb on - strand, within SM_b20389 at 402.005 kb on - strand at 402.005 kb on - strand at 402.081 kb on + strand at 402.112 kb on - strand at 402.119 kb on - strand at 402.217 kb on + strand at 402.234 kb on - strand at 402.238 kb on + strand at 402.238 kb on + strand at 402.323 kb on + strand at 402.372 kb on - strand at 402.399 kb on - strand at 402.399 kb on - strand at 402.462 kb on + strand at 402.462 kb on + strand at 402.463 kb on - strand at 402.527 kb on - strand at 402.527 kb on - strand at 402.548 kb on + strand at 402.549 kb on - strand at 402.569 kb on + strand, within SM_b20390
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 399,981 + +1.2 399,981 + +0.1 399,982 - +0.7 400,066 - +0.9 400,066 - +0.0 400,158 + SM_b20388 0.18 +0.3 400,158 + SM_b20388 0.18 +0.2 400,159 - SM_b20388 0.18 +0.6 400,193 + SM_b20388 0.22 -0.1 400,220 + SM_b20388 0.24 +0.9 400,228 + SM_b20388 0.25 -1.9 400,228 + SM_b20388 0.25 +0.7 400,265 + SM_b20388 0.29 -0.3 400,311 - +0.5 400,377 + SM_b20388 0.40 -0.7 400,378 - SM_b20388 0.41 -0.2 400,450 + SM_b20388 0.48 -0.1 400,451 - SM_b20388 0.48 -0.9 400,464 + SM_b20388 0.49 +0.1 400,489 - SM_b20388 0.52 +0.4 400,539 - SM_b20388 0.57 -0.1 400,613 + SM_b20388 0.65 -0.0 400,614 - SM_b20388 0.65 -0.2 400,614 - SM_b20388 0.65 +0.6 400,615 - SM_b20388 0.65 -0.2 400,659 + SM_b20388 0.69 -0.1 400,659 + SM_b20388 0.69 +3.2 400,856 + SM_b20388 0.89 +1.5 400,856 + SM_b20388 0.89 -0.6 400,856 + SM_b20388 0.89 -1.3 400,856 + SM_b20388 0.89 -0.5 400,857 - SM_b20388 0.89 +0.4 400,857 - SM_b20388 0.89 +0.5 400,857 - SM_b20388 0.89 +0.5 401,643 - SM_b20389 0.65 +0.4 401,690 + SM_b20389 0.70 -0.6 401,690 + SM_b20389 0.70 -2.2 401,690 + SM_b20389 0.70 -0.5 401,690 + SM_b20389 0.70 -0.2 401,690 + SM_b20389 0.70 -0.1 401,691 - SM_b20389 0.70 -1.2 401,691 - SM_b20389 0.70 -0.3 401,691 - SM_b20389 0.70 +1.4 401,691 - SM_b20389 0.70 -0.2 401,691 - SM_b20389 0.70 +0.0 401,770 + SM_b20389 0.77 -0.1 401,770 + SM_b20389 0.77 -0.5 401,770 + SM_b20389 0.77 -1.1 401,770 + SM_b20389 0.77 -0.2 401,770 + SM_b20389 0.77 +0.4 401,770 + SM_b20389 0.77 -0.8 401,771 - SM_b20389 0.78 +0.8 401,771 - SM_b20389 0.78 -0.3 401,862 - SM_b20389 0.86 +0.0 402,005 - +0.3 402,005 - -1.5 402,081 + +0.0 402,112 - -0.5 402,119 - -0.1 402,217 + -0.1 402,234 - +0.1 402,238 + +0.1 402,238 + +1.0 402,323 + -0.1 402,372 - +0.0 402,399 - +0.7 402,399 - +0.5 402,462 + -0.3 402,462 + +0.4 402,463 - +0.0 402,527 - +0.4 402,527 - +0.1 402,548 + +0.5 402,549 - -0.2 402,569 + SM_b20390 0.11 -0.5
Or see this region's nucleotide sequence