Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20312 and SM_b20313 are separated by 113 nucleotides SM_b20313 and SM_b20314 overlap by 32 nucleotides
SM_b20312: SM_b20312 - dihydroxyacetone kinase, at 312,527 to 314,614
_b20312
SM_b20313: SM_b20313 - glycerone kinase, at 314,728 to 315,411
_b20313
SM_b20314: SM_b20314 - glycerone kinase, at 315,380 to 316,372
_b20314
Position (kb) 314
315
316 Strain fitness (log2 ratio) -1
0
1
2 at 313.730 kb on + strand, within SM_b20312 at 313.888 kb on + strand, within SM_b20312 at 313.888 kb on - strand, within SM_b20312 at 313.993 kb on + strand, within SM_b20312 at 313.993 kb on + strand, within SM_b20312 at 313.994 kb on - strand, within SM_b20312 at 313.994 kb on - strand, within SM_b20312 at 314.092 kb on + strand, within SM_b20312 at 314.093 kb on - strand, within SM_b20312 at 314.093 kb on - strand, within SM_b20312 at 314.212 kb on + strand, within SM_b20312 at 314.490 kb on + strand at 314.493 kb on + strand at 314.515 kb on - strand at 314.625 kb on - strand at 315.019 kb on + strand, within SM_b20313 at 315.020 kb on - strand, within SM_b20313 at 315.020 kb on - strand, within SM_b20313 at 315.053 kb on + strand, within SM_b20313 at 315.294 kb on - strand, within SM_b20313 at 315.486 kb on + strand, within SM_b20314 at 315.486 kb on + strand, within SM_b20314 at 315.487 kb on - strand, within SM_b20314 at 315.487 kb on - strand, within SM_b20314 at 315.508 kb on - strand, within SM_b20314 at 315.562 kb on - strand, within SM_b20314 at 316.054 kb on - strand, within SM_b20314 at 316.054 kb on - strand, within SM_b20314
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 313,730 + SM_b20312 0.58 -0.5 313,888 + SM_b20312 0.65 +1.2 313,888 - SM_b20312 0.65 +0.7 313,993 + SM_b20312 0.70 -0.5 313,993 + SM_b20312 0.70 +0.2 313,994 - SM_b20312 0.70 +0.8 313,994 - SM_b20312 0.70 +0.0 314,092 + SM_b20312 0.75 +1.6 314,093 - SM_b20312 0.75 -1.4 314,093 - SM_b20312 0.75 +0.6 314,212 + SM_b20312 0.81 -0.2 314,490 + -0.8 314,493 + +0.1 314,515 - +1.8 314,625 - +0.1 315,019 + SM_b20313 0.43 +0.3 315,020 - SM_b20313 0.43 -0.4 315,020 - SM_b20313 0.43 +0.3 315,053 + SM_b20313 0.48 +0.1 315,294 - SM_b20313 0.83 +0.3 315,486 + SM_b20314 0.11 +0.8 315,486 + SM_b20314 0.11 +1.4 315,487 - SM_b20314 0.11 +0.5 315,487 - SM_b20314 0.11 -0.1 315,508 - SM_b20314 0.13 -0.0 315,562 - SM_b20314 0.18 +0.1 316,054 - SM_b20314 0.68 +0.0 316,054 - SM_b20314 0.68 +0.6
Or see this region's nucleotide sequence