Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20270 and SM_b20271 are separated by 83 nucleotides SM_b20271 and SM_b20272 are separated by 400 nucleotides
SM_b20270: SM_b20270 - proline racemase, at 275,434 to 276,462
_b20270
SM_b20271: SM_b20271 - hypothetical protein, at 276,546 to 276,977
_b20271
SM_b20272: SM_b20272 - transporter protein, at 277,378 to 278,586
_b20272
Position (kb) 276
277 Strain fitness (log2 ratio) -1
0
1 at 275.689 kb on - strand, within SM_b20270 at 275.847 kb on + strand, within SM_b20270 at 275.848 kb on - strand, within SM_b20270 at 275.848 kb on - strand, within SM_b20270 at 276.378 kb on + strand at 276.641 kb on + strand, within SM_b20271 at 277.087 kb on + strand at 277.088 kb on - strand at 277.265 kb on + strand at 277.265 kb on + strand at 277.266 kb on - strand at 277.266 kb on - strand at 277.394 kb on - strand at 277.512 kb on + strand, within SM_b20272 at 277.513 kb on - strand, within SM_b20272 at 277.514 kb on + strand, within SM_b20272 at 277.560 kb on + strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.782 kb on - strand, within SM_b20272 at 277.782 kb on - strand, within SM_b20272 at 277.849 kb on - strand, within SM_b20272 at 277.855 kb on + strand, within SM_b20272 at 277.856 kb on - strand, within SM_b20272 at 277.883 kb on + strand, within SM_b20272 at 277.953 kb on + strand, within SM_b20272 at 277.953 kb on + strand, within SM_b20272
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 275,689 - SM_b20270 0.25 +0.0 275,847 + SM_b20270 0.40 -1.7 275,848 - SM_b20270 0.40 +1.1 275,848 - SM_b20270 0.40 +0.0 276,378 + -0.1 276,641 + SM_b20271 0.22 -0.7 277,087 + -0.4 277,088 - +0.7 277,265 + +0.0 277,265 + +0.4 277,266 - -0.5 277,266 - -0.3 277,394 - -0.1 277,512 + SM_b20272 0.11 +0.6 277,513 - SM_b20272 0.11 +0.6 277,514 + SM_b20272 0.11 -0.6 277,560 + SM_b20272 0.15 +0.2 277,561 - SM_b20272 0.15 +0.2 277,561 - SM_b20272 0.15 -1.1 277,561 - SM_b20272 0.15 +0.8 277,561 - SM_b20272 0.15 -0.8 277,782 - SM_b20272 0.33 +0.1 277,782 - SM_b20272 0.33 -0.4 277,849 - SM_b20272 0.39 +1.2 277,855 + SM_b20272 0.39 -0.2 277,856 - SM_b20272 0.40 +0.1 277,883 + SM_b20272 0.42 +0.7 277,953 + SM_b20272 0.48 -0.2 277,953 + SM_b20272 0.48 -0.7
Or see this region's nucleotide sequence