Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20215 and SM_b20216 are separated by 140 nucleotides SM_b20216 and SM_b20217 are separated by 217 nucleotides
SM_b20215: SM_b20215 - transcriptional regulator, at 222,993 to 223,973
_b20215
SM_b20216: SM_b20216 - epoxide hydrolase, at 224,114 to 225,160
_b20216
SM_b20217: SM_b20217 - hypothetical protein, at 225,378 to 226,043
_b20217
Position (kb)
224
225
226 Strain fitness (log2 ratio)
-2
-1
0
1 at 223.129 kb on - strand, within SM_b20215 at 223.135 kb on + strand, within SM_b20215 at 223.136 kb on - strand, within SM_b20215 at 223.193 kb on + strand, within SM_b20215 at 223.194 kb on - strand, within SM_b20215 at 223.218 kb on + strand, within SM_b20215 at 223.430 kb on + strand, within SM_b20215 at 223.534 kb on - strand, within SM_b20215 at 223.666 kb on - strand, within SM_b20215 at 223.994 kb on + strand at 223.999 kb on + strand at 223.999 kb on + strand at 224.000 kb on - strand at 224.023 kb on + strand at 224.066 kb on + strand at 224.066 kb on + strand at 224.067 kb on - strand at 224.260 kb on + strand, within SM_b20216 at 224.260 kb on + strand, within SM_b20216 at 224.277 kb on + strand, within SM_b20216 at 224.307 kb on + strand, within SM_b20216 at 224.307 kb on + strand, within SM_b20216 at 224.307 kb on + strand, within SM_b20216 at 224.307 kb on + strand, within SM_b20216 at 224.308 kb on - strand, within SM_b20216 at 224.384 kb on + strand, within SM_b20216 at 224.385 kb on - strand, within SM_b20216 at 224.596 kb on + strand, within SM_b20216 at 224.651 kb on + strand, within SM_b20216 at 224.757 kb on - strand, within SM_b20216 at 224.933 kb on + strand, within SM_b20216 at 225.259 kb on + strand at 225.259 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.278 kb on - strand at 225.419 kb on + strand at 225.419 kb on + strand at 225.435 kb on - strand at 225.545 kb on + strand, within SM_b20217 at 225.624 kb on + strand, within SM_b20217 at 225.694 kb on + strand, within SM_b20217 at 225.735 kb on + strand, within SM_b20217 at 225.736 kb on - strand, within SM_b20217 at 225.787 kb on - strand, within SM_b20217 at 225.796 kb on - strand, within SM_b20217 at 225.796 kb on - strand, within SM_b20217 at 226.002 kb on + strand at 226.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 223,129 - SM_b20215 0.14 -0.9 223,135 + SM_b20215 0.14 -1.1 223,136 - SM_b20215 0.15 -0.4 223,193 + SM_b20215 0.20 -0.2 223,194 - SM_b20215 0.20 +0.2 223,218 + SM_b20215 0.23 -2.3 223,430 + SM_b20215 0.45 +0.2 223,534 - SM_b20215 0.55 -0.7 223,666 - SM_b20215 0.69 -0.6 223,994 + -0.2 223,999 + +0.7 223,999 + +1.0 224,000 - +0.5 224,023 + -0.5 224,066 + -0.5 224,066 + +1.0 224,067 - +0.2 224,260 + SM_b20216 0.14 +0.1 224,260 + SM_b20216 0.14 +0.6 224,277 + SM_b20216 0.16 -0.1 224,307 + SM_b20216 0.18 +1.4 224,307 + SM_b20216 0.18 +0.7 224,307 + SM_b20216 0.18 +0.3 224,307 + SM_b20216 0.18 -0.2 224,308 - SM_b20216 0.19 +0.6 224,384 + SM_b20216 0.26 +1.6 224,385 - SM_b20216 0.26 -0.0 224,596 + SM_b20216 0.46 +0.2 224,651 + SM_b20216 0.51 +1.4 224,757 - SM_b20216 0.61 -0.6 224,933 + SM_b20216 0.78 -0.1 225,259 + -1.2 225,259 + -0.3 225,277 + +0.6 225,277 + +0.6 225,277 + +0.6 225,277 + +1.3 225,277 + -1.0 225,278 - -0.3 225,419 + -1.1 225,419 + -0.4 225,435 - -0.6 225,545 + SM_b20217 0.25 +0.7 225,624 + SM_b20217 0.37 +0.2 225,694 + SM_b20217 0.47 +0.3 225,735 + SM_b20217 0.54 -0.3 225,736 - SM_b20217 0.54 -0.7 225,787 - SM_b20217 0.61 -0.7 225,796 - SM_b20217 0.63 -1.3 225,796 - SM_b20217 0.63 +0.8 226,002 + -0.2 226,142 - -0.5
Or see this region's nucleotide sequence