Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20211 and SM_b20212 are separated by 187 nucleotides SM_b20212 and SM_b20213 are separated by 37 nucleotides SM_b20213 and SM_b20214 are separated by 263 nucleotides
SM_b20211: SM_b20211 - transcriptional regulator, at 218,142 to 219,074
_b20211
SM_b20212: SM_b20212 - hypothetical protein, at 219,262 to 219,942
_b20212
SM_b20213: SM_b20213 - hypothetical protein, at 219,980 to 221,863
_b20213
SM_b20214: SM_b20214 - oxidoreductase, at 222,127 to 222,930
_b20214
Position (kb) 219
220
221
222 Strain fitness (log2 ratio) -2
-1
0
1
2 at 219.074 kb on + strand at 219.190 kb on - strand at 219.191 kb on + strand at 219.210 kb on + strand at 219.219 kb on + strand at 219.359 kb on - strand, within SM_b20212 at 219.361 kb on + strand, within SM_b20212 at 219.362 kb on - strand, within SM_b20212 at 219.362 kb on - strand, within SM_b20212 at 219.362 kb on - strand, within SM_b20212 at 219.514 kb on - strand, within SM_b20212 at 219.524 kb on + strand, within SM_b20212 at 219.524 kb on + strand, within SM_b20212 at 219.525 kb on - strand, within SM_b20212 at 219.562 kb on + strand, within SM_b20212 at 219.563 kb on - strand, within SM_b20212 at 219.634 kb on + strand, within SM_b20212 at 219.635 kb on - strand, within SM_b20212 at 219.826 kb on + strand, within SM_b20212 at 219.940 kb on + strand at 219.971 kb on - strand at 220.131 kb on + strand at 220.132 kb on - strand at 220.136 kb on + strand at 220.136 kb on + strand at 220.136 kb on + strand at 220.598 kb on + strand, within SM_b20213 at 220.598 kb on + strand, within SM_b20213 at 220.599 kb on - strand, within SM_b20213 at 220.781 kb on + strand, within SM_b20213 at 221.009 kb on + strand, within SM_b20213 at 221.009 kb on + strand, within SM_b20213 at 221.009 kb on + strand, within SM_b20213 at 221.032 kb on + strand, within SM_b20213 at 221.043 kb on - strand, within SM_b20213 at 221.043 kb on - strand, within SM_b20213 at 221.066 kb on + strand, within SM_b20213 at 221.066 kb on + strand, within SM_b20213 at 221.120 kb on + strand, within SM_b20213 at 221.225 kb on + strand, within SM_b20213 at 221.226 kb on - strand, within SM_b20213 at 221.226 kb on - strand, within SM_b20213 at 221.241 kb on - strand, within SM_b20213 at 221.316 kb on + strand, within SM_b20213 at 221.316 kb on + strand, within SM_b20213 at 221.435 kb on + strand, within SM_b20213 at 221.435 kb on + strand, within SM_b20213 at 221.435 kb on + strand, within SM_b20213 at 221.436 kb on - strand, within SM_b20213 at 221.445 kb on - strand, within SM_b20213 at 221.504 kb on + strand, within SM_b20213 at 221.504 kb on + strand, within SM_b20213 at 221.504 kb on + strand, within SM_b20213 at 221.766 kb on - strand at 221.776 kb on - strand at 221.902 kb on + strand at 222.034 kb on + strand at 222.091 kb on - strand at 222.191 kb on - strand at 222.276 kb on + strand, within SM_b20214 at 222.359 kb on + strand, within SM_b20214 at 222.360 kb on - strand, within SM_b20214 at 222.493 kb on + strand, within SM_b20214 at 222.494 kb on - strand, within SM_b20214 at 222.516 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.589 kb on + strand, within SM_b20214 at 222.666 kb on - strand, within SM_b20214 at 222.666 kb on - strand, within SM_b20214 at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 219,074 + +0.4 219,190 - +0.4 219,191 + +0.5 219,210 + +0.1 219,219 + +1.6 219,359 - SM_b20212 0.14 +0.1 219,361 + SM_b20212 0.15 -0.4 219,362 - SM_b20212 0.15 -0.7 219,362 - SM_b20212 0.15 +0.6 219,362 - SM_b20212 0.15 +0.8 219,514 - SM_b20212 0.37 -0.6 219,524 + SM_b20212 0.38 +0.9 219,524 + SM_b20212 0.38 -1.0 219,525 - SM_b20212 0.39 +1.0 219,562 + SM_b20212 0.44 -0.2 219,563 - SM_b20212 0.44 +0.3 219,634 + SM_b20212 0.55 -0.6 219,635 - SM_b20212 0.55 +0.2 219,826 + SM_b20212 0.83 +0.5 219,940 + -0.2 219,971 - +0.2 220,131 + +0.3 220,132 - -0.4 220,136 + -1.0 220,136 + -1.0 220,136 + +0.5 220,598 + SM_b20213 0.33 -0.7 220,598 + SM_b20213 0.33 -0.2 220,599 - SM_b20213 0.33 -0.9 220,781 + SM_b20213 0.43 -0.6 221,009 + SM_b20213 0.55 -0.1 221,009 + SM_b20213 0.55 -2.4 221,009 + SM_b20213 0.55 -0.4 221,032 + SM_b20213 0.56 -0.3 221,043 - SM_b20213 0.56 -0.9 221,043 - SM_b20213 0.56 -0.6 221,066 + SM_b20213 0.58 -1.2 221,066 + SM_b20213 0.58 -1.0 221,120 + SM_b20213 0.61 -0.3 221,225 + SM_b20213 0.66 +0.5 221,226 - SM_b20213 0.66 -1.1 221,226 - SM_b20213 0.66 -0.5 221,241 - SM_b20213 0.67 +0.8 221,316 + SM_b20213 0.71 -0.7 221,316 + SM_b20213 0.71 +0.7 221,435 + SM_b20213 0.77 -0.5 221,435 + SM_b20213 0.77 -0.2 221,435 + SM_b20213 0.77 -0.1 221,436 - SM_b20213 0.77 -2.4 221,445 - SM_b20213 0.78 -0.2 221,504 + SM_b20213 0.81 -0.0 221,504 + SM_b20213 0.81 -0.4 221,504 + SM_b20213 0.81 -2.5 221,766 - +0.3 221,776 - -0.8 221,902 + +0.4 222,034 + -0.6 222,091 - +0.4 222,191 - -0.2 222,276 + SM_b20214 0.19 -0.2 222,359 + SM_b20214 0.29 -1.6 222,360 - SM_b20214 0.29 -0.2 222,493 + SM_b20214 0.46 -2.0 222,494 - SM_b20214 0.46 +0.3 222,516 - SM_b20214 0.48 +0.2 222,544 - SM_b20214 0.52 -0.2 222,544 - SM_b20214 0.52 +0.3 222,544 - SM_b20214 0.52 -0.0 222,589 + SM_b20214 0.57 +1.4 222,666 - SM_b20214 0.67 +1.0 222,666 - SM_b20214 0.67 +0.1 222,850 + +0.4 222,850 + -0.4 222,850 + -0.6 222,850 + -0.1 222,850 + +2.4 222,851 - -0.4
Or see this region's nucleotide sequence