Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20175 and SM_b20176 overlap by 4 nucleotides SM_b20176 and SM_b20177 are separated by 173 nucleotides SM_b20177 and SM_b20178 are separated by 126 nucleotides
SM_b20175: SM_b20175 - hypothetical protein, at 193,345 to 194,211
_b20175
SM_b20176: SM_b20176 - hypothetical protein, at 194,208 to 194,753
_b20176
SM_b20177: SM_b20177 - hypothetical protein, at 194,927 to 195,448
_b20177
SM_b20178: SM_b20178 - hypothetical protein, at 195,575 to 196,762
_b20178
Position (kb) 194
195
196 Strain fitness (log2 ratio) -1
0
1
2
3 at 194.050 kb on + strand, within SM_b20175 at 194.407 kb on + strand, within SM_b20176 at 194.488 kb on + strand, within SM_b20176 at 194.488 kb on + strand, within SM_b20176 at 194.539 kb on - strand, within SM_b20176 at 194.652 kb on + strand, within SM_b20176 at 194.658 kb on + strand, within SM_b20176 at 194.658 kb on + strand, within SM_b20176 at 194.659 kb on - strand, within SM_b20176 at 194.659 kb on - strand, within SM_b20176 at 194.822 kb on - strand at 194.959 kb on - strand at 194.959 kb on - strand at 195.065 kb on + strand, within SM_b20177 at 195.070 kb on + strand, within SM_b20177 at 195.071 kb on - strand, within SM_b20177 at 195.108 kb on + strand, within SM_b20177 at 195.108 kb on + strand, within SM_b20177 at 195.295 kb on + strand, within SM_b20177 at 195.296 kb on - strand, within SM_b20177 at 195.298 kb on - strand, within SM_b20177 at 195.298 kb on - strand, within SM_b20177 at 195.345 kb on - strand, within SM_b20177 at 195.345 kb on - strand, within SM_b20177 at 195.482 kb on + strand at 195.483 kb on - strand at 195.491 kb on + strand at 195.492 kb on - strand at 195.514 kb on - strand at 195.524 kb on + strand at 195.794 kb on + strand, within SM_b20178 at 195.795 kb on - strand, within SM_b20178 at 195.900 kb on + strand, within SM_b20178 at 195.900 kb on + strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 196.313 kb on + strand, within SM_b20178 at 196.313 kb on + strand, within SM_b20178 at 196.314 kb on - strand, within SM_b20178
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 194,050 + SM_b20175 0.81 -1.4 194,407 + SM_b20176 0.36 +1.2 194,488 + SM_b20176 0.51 +0.2 194,488 + SM_b20176 0.51 +0.8 194,539 - SM_b20176 0.61 +0.8 194,652 + SM_b20176 0.81 +0.0 194,658 + SM_b20176 0.82 +0.0 194,658 + SM_b20176 0.82 -0.4 194,659 - SM_b20176 0.83 +2.4 194,659 - SM_b20176 0.83 +1.3 194,822 - -0.7 194,959 - +0.2 194,959 - +0.2 195,065 + SM_b20177 0.26 -0.3 195,070 + SM_b20177 0.27 +0.2 195,071 - SM_b20177 0.28 +3.0 195,108 + SM_b20177 0.35 +0.2 195,108 + SM_b20177 0.35 -0.8 195,295 + SM_b20177 0.70 +0.1 195,296 - SM_b20177 0.71 +0.2 195,298 - SM_b20177 0.71 -0.5 195,298 - SM_b20177 0.71 +1.8 195,345 - SM_b20177 0.80 +1.1 195,345 - SM_b20177 0.80 -0.2 195,482 + -0.3 195,483 - +1.8 195,491 + +0.6 195,492 - +0.1 195,514 - +1.1 195,524 + +0.6 195,794 + SM_b20178 0.18 -1.2 195,795 - SM_b20178 0.19 +1.9 195,900 + SM_b20178 0.27 +0.8 195,900 + SM_b20178 0.27 -0.1 195,901 - SM_b20178 0.27 -0.0 195,901 - SM_b20178 0.27 -0.6 195,901 - SM_b20178 0.27 +0.2 196,313 + SM_b20178 0.62 -0.5 196,313 + SM_b20178 0.62 -0.3 196,314 - SM_b20178 0.62 +0.1
Or see this region's nucleotide sequence