Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20150

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20149 and SM_b20150 are separated by 317 nucleotidesSM_b20150 and SM_b20151 are separated by 65 nucleotidesSM_b20151 and SM_b20152 overlap by 7 nucleotides SM_b20149: SM_b20149 - hypothetical protein, at 164,391 to 165,422 _b20149 SM_b20150: SM_b20150 - inositol monophosphatase, at 165,740 to 166,579 _b20150 SM_b20151: SM_b20151 - hypothetical protein, at 166,645 to 167,262 _b20151 SM_b20152: SM_b20152 - hypothetical protein, at 167,256 to 168,974 _b20152 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2at 164.834 kb on + strand, within SM_b20149at 164.834 kb on + strand, within SM_b20149at 164.835 kb on - strand, within SM_b20149at 164.835 kb on - strand, within SM_b20149at 165.348 kb on - strandat 165.918 kb on + strand, within SM_b20150at 165.919 kb on - strand, within SM_b20150at 165.919 kb on - strand, within SM_b20150at 165.984 kb on + strand, within SM_b20150at 165.985 kb on - strand, within SM_b20150at 166.130 kb on + strand, within SM_b20150at 166.360 kb on + strand, within SM_b20150at 166.528 kb on - strandat 166.817 kb on - strand, within SM_b20151at 166.877 kb on + strand, within SM_b20151at 166.878 kb on - strand, within SM_b20151at 166.886 kb on - strand, within SM_b20151at 166.886 kb on - strand, within SM_b20151at 166.886 kb on - strand, within SM_b20151at 166.942 kb on + strand, within SM_b20151at 166.942 kb on + strand, within SM_b20151at 166.942 kb on + strand, within SM_b20151at 166.942 kb on + strand, within SM_b20151at 166.943 kb on - strand, within SM_b20151at 166.943 kb on - strand, within SM_b20151at 166.945 kb on + strand, within SM_b20151at 166.945 kb on + strand, within SM_b20151at 166.945 kb on + strand, within SM_b20151at 166.945 kb on + strand, within SM_b20151at 166.945 kb on + strand, within SM_b20151at 166.946 kb on - strand, within SM_b20151at 166.946 kb on - strand, within SM_b20151at 166.950 kb on - strand, within SM_b20151at 167.098 kb on + strand, within SM_b20151at 167.098 kb on + strand, within SM_b20151at 167.491 kb on - strand, within SM_b20152at 167.575 kb on - strand, within SM_b20152at 167.575 kb on - strand, within SM_b20152

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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164,834 + SM_b20149 0.43 -1.1
164,834 + SM_b20149 0.43 -1.1
164,835 - SM_b20149 0.43 -0.2
164,835 - SM_b20149 0.43 +0.3
165,348 - -2.2
165,918 + SM_b20150 0.21 -0.3
165,919 - SM_b20150 0.21 +0.0
165,919 - SM_b20150 0.21 -0.4
165,984 + SM_b20150 0.29 +0.1
165,985 - SM_b20150 0.29 -0.0
166,130 + SM_b20150 0.46 -0.9
166,360 + SM_b20150 0.74 +0.8
166,528 - +0.8
166,817 - SM_b20151 0.28 -0.4
166,877 + SM_b20151 0.38 -0.1
166,878 - SM_b20151 0.38 -0.3
166,886 - SM_b20151 0.39 +0.8
166,886 - SM_b20151 0.39 -0.5
166,886 - SM_b20151 0.39 +0.5
166,942 + SM_b20151 0.48 +1.1
166,942 + SM_b20151 0.48 +0.7
166,942 + SM_b20151 0.48 +0.7
166,942 + SM_b20151 0.48 +0.1
166,943 - SM_b20151 0.48 -0.4
166,943 - SM_b20151 0.48 -0.5
166,945 + SM_b20151 0.49 -0.2
166,945 + SM_b20151 0.49 -1.7
166,945 + SM_b20151 0.49 +1.1
166,945 + SM_b20151 0.49 +2.1
166,945 + SM_b20151 0.49 +0.2
166,946 - SM_b20151 0.49 -0.4
166,946 - SM_b20151 0.49 -0.2
166,950 - SM_b20151 0.49 -0.2
167,098 + SM_b20151 0.73 -0.4
167,098 + SM_b20151 0.73 -0.4
167,491 - SM_b20152 0.14 -0.1
167,575 - SM_b20152 0.19 +0.3
167,575 - SM_b20152 0.19 -0.5

Or see this region's nucleotide sequence