Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20129 and SM_b20130 are separated by 50 nucleotides SM_b20130 and SM_b20131 overlap by 4 nucleotides SM_b20131 and SM_b20132 overlap by 4 nucleotides
SM_b20129: SM_b20129 - transcriptional regulator, at 141,805 to 142,584
_b20129
SM_b20130: SM_b20130 - dehydrogenase, at 142,635 to 143,498
_b20130
SM_b20131: SM_b20131 - oxidoreductase, at 143,495 to 143,980
_b20131
SM_b20132: SM_b20132 - dehydrogenase, at 143,977 to 146,295
_b20132
Position (kb) 143
144 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 142.651 kb on - strand at 142.651 kb on - strand at 142.653 kb on + strand at 142.653 kb on + strand at 142.653 kb on + strand at 142.818 kb on - strand, within SM_b20130 at 142.821 kb on + strand, within SM_b20130 at 142.821 kb on + strand, within SM_b20130 at 142.821 kb on + strand, within SM_b20130 at 142.942 kb on + strand, within SM_b20130 at 142.943 kb on - strand, within SM_b20130 at 143.046 kb on + strand, within SM_b20130 at 143.140 kb on + strand, within SM_b20130 at 143.578 kb on - strand, within SM_b20131 at 143.897 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.977 kb on - strand at 143.986 kb on + strand at 143.986 kb on + strand at 143.986 kb on + strand at 143.986 kb on + strand at 143.987 kb on - strand at 143.987 kb on - strand at 144.088 kb on + strand at 144.088 kb on + strand at 144.088 kb on + strand at 144.292 kb on + strand, within SM_b20132 at 144.292 kb on + strand, within SM_b20132 at 144.293 kb on - strand, within SM_b20132 at 144.293 kb on - strand, within SM_b20132 at 144.317 kb on - strand, within SM_b20132 at 144.398 kb on - strand, within SM_b20132 at 144.566 kb on - strand, within SM_b20132 at 144.592 kb on + strand, within SM_b20132 at 144.592 kb on + strand, within SM_b20132 at 144.593 kb on - strand, within SM_b20132 at 144.595 kb on - strand, within SM_b20132 at 144.595 kb on - strand, within SM_b20132 at 144.890 kb on + strand, within SM_b20132 at 144.890 kb on + strand, within SM_b20132 at 144.891 kb on - strand, within SM_b20132 at 144.891 kb on - strand, within SM_b20132
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 142,651 - -1.2 142,651 - +0.0 142,653 + -0.3 142,653 + +0.1 142,653 + -0.9 142,818 - SM_b20130 0.21 +0.3 142,821 + SM_b20130 0.22 -0.8 142,821 + SM_b20130 0.22 +0.4 142,821 + SM_b20130 0.22 -0.0 142,942 + SM_b20130 0.36 +0.4 142,943 - SM_b20130 0.36 +0.3 143,046 + SM_b20130 0.48 -0.6 143,140 + SM_b20130 0.58 -0.9 143,578 - SM_b20131 0.17 +1.0 143,897 - SM_b20131 0.83 +0.0 143,916 - SM_b20131 0.87 +9.2 143,916 - SM_b20131 0.87 +1.3 143,916 - SM_b20131 0.87 -0.1 143,916 - SM_b20131 0.87 +0.8 143,977 - -0.9 143,986 + -0.6 143,986 + +0.3 143,986 + +0.1 143,986 + -0.4 143,987 - +1.0 143,987 - -0.2 144,088 + +0.9 144,088 + +0.7 144,088 + +0.6 144,292 + SM_b20132 0.14 -0.1 144,292 + SM_b20132 0.14 -1.1 144,293 - SM_b20132 0.14 +0.9 144,293 - SM_b20132 0.14 -0.3 144,317 - SM_b20132 0.15 -0.0 144,398 - SM_b20132 0.18 +2.4 144,566 - SM_b20132 0.25 -2.2 144,592 + SM_b20132 0.27 +1.6 144,592 + SM_b20132 0.27 +0.0 144,593 - SM_b20132 0.27 -0.6 144,595 - SM_b20132 0.27 -0.8 144,595 - SM_b20132 0.27 -1.2 144,890 + SM_b20132 0.39 -0.8 144,890 + SM_b20132 0.39 +0.2 144,891 - SM_b20132 0.39 -0.8 144,891 - SM_b20132 0.39 -0.1
Or see this region's nucleotide sequence