Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20015 and SM_b20016 overlap by 4 nucleotides SM_b20016 and SM_b20017 overlap by 1 nucleotides SM_b20017 and SM_b20018 are separated by 249 nucleotides
SM_b20015: SM_b20015 - sugar ABC transporter permease, at 21,392 to 22,348
_b20015
SM_b20016: SM_b20016 - sugar ABC transporter permease, at 22,345 to 23,337
_b20016
SM_b20017: SM_b20017 - sugar ABC transporter ATP-binding protein, at 23,337 to 24,842
_b20017
SM_b20018: SM_b20018 - sugar ABC transporter substrate-binding protein, at 25,092 to 26,114
_b20018
Position (kb)
23
24
25 Strain fitness (log2 ratio)
-1
0
1
2 at 22.559 kb on + strand, within SM_b20016 at 22.655 kb on + strand, within SM_b20016 at 22.655 kb on + strand, within SM_b20016 at 22.656 kb on - strand, within SM_b20016 at 22.794 kb on - strand, within SM_b20016 at 22.794 kb on - strand, within SM_b20016 at 22.794 kb on - strand, within SM_b20016 at 23.127 kb on - strand, within SM_b20016 at 23.160 kb on + strand, within SM_b20016 at 23.161 kb on - strand, within SM_b20016 at 23.162 kb on + strand, within SM_b20016 at 23.162 kb on + strand, within SM_b20016 at 23.163 kb on - strand, within SM_b20016 at 23.163 kb on - strand, within SM_b20016 at 23.163 kb on - strand, within SM_b20016 at 23.351 kb on - strand at 23.700 kb on + strand, within SM_b20017 at 23.753 kb on - strand, within SM_b20017 at 23.827 kb on + strand, within SM_b20017 at 23.827 kb on + strand, within SM_b20017 at 23.828 kb on - strand, within SM_b20017 at 23.828 kb on - strand, within SM_b20017 at 24.473 kb on - strand, within SM_b20017 at 24.473 kb on - strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.806 kb on - strand at 24.806 kb on - strand at 25.139 kb on - strand at 25.144 kb on + strand at 25.144 kb on + strand at 25.144 kb on + strand at 25.145 kb on - strand at 25.145 kb on - strand at 25.220 kb on - strand, within SM_b20018 at 25.489 kb on + strand, within SM_b20018 at 25.653 kb on + strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.733 kb on - strand, within SM_b20018
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 22,559 + SM_b20016 0.22 -0.3 22,655 + SM_b20016 0.31 +0.9 22,655 + SM_b20016 0.31 +0.3 22,656 - SM_b20016 0.31 -1.2 22,794 - SM_b20016 0.45 -1.2 22,794 - SM_b20016 0.45 -1.1 22,794 - SM_b20016 0.45 +0.5 23,127 - SM_b20016 0.79 +0.0 23,160 + SM_b20016 0.82 +0.2 23,161 - SM_b20016 0.82 -1.0 23,162 + SM_b20016 0.82 +0.8 23,162 + SM_b20016 0.82 +1.4 23,163 - SM_b20016 0.82 -0.1 23,163 - SM_b20016 0.82 -0.6 23,163 - SM_b20016 0.82 +0.4 23,351 - +0.2 23,700 + SM_b20017 0.24 +0.3 23,753 - SM_b20017 0.28 -1.0 23,827 + SM_b20017 0.33 +0.5 23,827 + SM_b20017 0.33 +0.2 23,828 - SM_b20017 0.33 -0.4 23,828 - SM_b20017 0.33 -1.3 24,473 - SM_b20017 0.75 -0.1 24,473 - SM_b20017 0.75 -0.3 24,592 + SM_b20017 0.83 +2.1 24,592 + SM_b20017 0.83 -0.2 24,592 + SM_b20017 0.83 -0.6 24,806 - +1.0 24,806 - +0.0 25,139 - +0.1 25,144 + -0.5 25,144 + +0.1 25,144 + -0.1 25,145 - +0.9 25,145 - -0.8 25,220 - SM_b20018 0.13 +0.5 25,489 + SM_b20018 0.39 -0.9 25,653 + SM_b20018 0.55 -1.7 25,654 - SM_b20018 0.55 -1.6 25,654 - SM_b20018 0.55 +2.2 25,654 - SM_b20018 0.55 -0.1 25,654 - SM_b20018 0.55 +0.1 25,732 + SM_b20018 0.63 -0.0 25,732 + SM_b20018 0.63 -0.9 25,732 + SM_b20018 0.63 -0.2 25,732 + SM_b20018 0.63 -0.3 25,733 - SM_b20018 0.63 -0.5
Or see this region's nucleotide sequence