Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29555

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29550 and RR42_RS29555 are separated by 237 nucleotides RR42_RS29550: RR42_RS29550 - ABC transporter permease, at 1,985,430 to 1,986,281 _RS29550 RR42_RS29555: RR42_RS29555 - porin, at 1,986,519 to 1,987,643 _RS29555 Position (kb) 1986 1987 1988Strain fitness (log2 ratio) -1 0 1at 1987.737 kb on + strandat 1987.737 kb on + strandat 1987.793 kb on + strandat 1987.794 kb on - strandat 1987.817 kb on + strandat 1987.928 kb on - strandat 1987.928 kb on - strandat 1987.951 kb on + strandat 1987.951 kb on + strandat 1987.951 kb on + strandat 1987.952 kb on - strandat 1987.952 kb on - strandat 1988.022 kb on - strandat 1988.022 kb on - strandat 1988.097 kb on + strandat 1988.097 kb on + strandat 1988.097 kb on + strandat 1988.098 kb on - strandat 1988.098 kb on - strandat 1988.136 kb on + strandat 1988.268 kb on - strandat 1988.268 kb on - strandat 1988.268 kb on - strandat 1988.268 kb on - strandat 1988.276 kb on + strandat 1988.294 kb on - strandat 1988.299 kb on + strandat 1988.300 kb on - strandat 1988.300 kb on - strandat 1988.300 kb on - strandat 1988.305 kb on + strandat 1988.306 kb on - strandat 1988.306 kb on - strandat 1988.309 kb on + strandat 1988.309 kb on + strandat 1988.310 kb on - strandat 1988.310 kb on - strandat 1988.310 kb on - strandat 1988.310 kb on - strandat 1988.310 kb on - strandat 1988.310 kb on - strandat 1988.357 kb on + strandat 1988.362 kb on - strandat 1988.570 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,987,737 + +0.2
1,987,737 + +0.3
1,987,793 + -0.9
1,987,794 - +0.5
1,987,817 + -0.1
1,987,928 - +1.3
1,987,928 - -0.4
1,987,951 + +0.1
1,987,951 + +0.2
1,987,951 + -0.3
1,987,952 - +1.1
1,987,952 - +0.4
1,988,022 - +0.5
1,988,022 - -0.4
1,988,097 + +0.1
1,988,097 + +0.2
1,988,097 + +0.9
1,988,098 - +0.8
1,988,098 - +0.1
1,988,136 + +0.2
1,988,268 - +0.1
1,988,268 - +0.4
1,988,268 - -0.2
1,988,268 - -1.0
1,988,276 + +0.2
1,988,294 - -0.2
1,988,299 + -1.0
1,988,300 - -0.1
1,988,300 - -0.0
1,988,300 - +0.9
1,988,305 + +1.2
1,988,306 - +0.6
1,988,306 - -0.5
1,988,309 + +0.5
1,988,309 + +0.1
1,988,310 - +0.8
1,988,310 - +0.3
1,988,310 - +0.0
1,988,310 - -0.1
1,988,310 - +0.6
1,988,310 - -0.8
1,988,357 + +0.6
1,988,362 - -0.3
1,988,570 + -1.7

Or see this region's nucleotide sequence