Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26120

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26115 and RR42_RS26120 are separated by 13 nucleotidesRR42_RS26120 and RR42_RS26125 are separated by 20 nucleotides RR42_RS26115: RR42_RS26115 - dihydrolipoamide dehydrogenase, at 1,210,433 to 1,212,202 _RS26115 RR42_RS26120: RR42_RS26120 - dihydrolipoamide acetyltransferase, at 1,212,216 to 1,213,838 _RS26120 RR42_RS26125: RR42_RS26125 - pyruvate dehydrogenase, at 1,213,859 to 1,216,552 _RS26125 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -2 -1 0 1at 1211.484 kb on + strand, within RR42_RS26115at 1212.004 kb on + strand, within RR42_RS26115at 1212.387 kb on + strand, within RR42_RS26120at 1212.388 kb on - strand, within RR42_RS26120at 1212.632 kb on - strand, within RR42_RS26120at 1212.632 kb on - strand, within RR42_RS26120at 1212.632 kb on - strand, within RR42_RS26120at 1212.632 kb on - strand, within RR42_RS26120at 1212.635 kb on - strand, within RR42_RS26120at 1212.801 kb on - strand, within RR42_RS26120at 1212.837 kb on + strand, within RR42_RS26120at 1212.838 kb on - strand, within RR42_RS26120at 1213.129 kb on + strand, within RR42_RS26120at 1213.410 kb on + strand, within RR42_RS26120at 1213.845 kb on + strandat 1213.845 kb on + strandat 1213.983 kb on + strandat 1214.023 kb on - strandat 1214.119 kb on - strandat 1214.119 kb on - strandat 1214.251 kb on - strand, within RR42_RS26125at 1214.400 kb on + strand, within RR42_RS26125at 1214.469 kb on + strand, within RR42_RS26125at 1214.469 kb on + strand, within RR42_RS26125at 1214.469 kb on + strand, within RR42_RS26125at 1214.470 kb on - strand, within RR42_RS26125at 1214.470 kb on - strand, within RR42_RS26125at 1214.493 kb on + strand, within RR42_RS26125at 1214.494 kb on - strand, within RR42_RS26125at 1214.494 kb on - strand, within RR42_RS26125at 1214.499 kb on + strand, within RR42_RS26125at 1214.499 kb on + strand, within RR42_RS26125at 1214.499 kb on + strand, within RR42_RS26125at 1214.520 kb on + strand, within RR42_RS26125at 1214.520 kb on + strand, within RR42_RS26125at 1214.521 kb on - strand, within RR42_RS26125at 1214.521 kb on - strand, within RR42_RS26125at 1214.758 kb on - strand, within RR42_RS26125at 1214.760 kb on + strand, within RR42_RS26125at 1214.760 kb on + strand, within RR42_RS26125at 1214.761 kb on - strand, within RR42_RS26125at 1214.761 kb on - strand, within RR42_RS26125at 1214.761 kb on - strand, within RR42_RS26125at 1214.766 kb on + strand, within RR42_RS26125at 1214.767 kb on - strand, within RR42_RS26125at 1214.767 kb on - strand, within RR42_RS26125

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,211,484 + RR42_RS26115 0.59 +0.5
1,212,004 + RR42_RS26115 0.89 +0.5
1,212,387 + RR42_RS26120 0.11 -0.8
1,212,388 - RR42_RS26120 0.11 -2.2
1,212,632 - RR42_RS26120 0.26 -1.2
1,212,632 - RR42_RS26120 0.26 -1.1
1,212,632 - RR42_RS26120 0.26 -0.5
1,212,632 - RR42_RS26120 0.26 +0.1
1,212,635 - RR42_RS26120 0.26 +0.3
1,212,801 - RR42_RS26120 0.36 -0.4
1,212,837 + RR42_RS26120 0.38 -0.0
1,212,838 - RR42_RS26120 0.38 -0.7
1,213,129 + RR42_RS26120 0.56 +0.6
1,213,410 + RR42_RS26120 0.74 +0.5
1,213,845 + -0.8
1,213,845 + +0.1
1,213,983 + +0.3
1,214,023 - -0.9
1,214,119 - +0.1
1,214,119 - -1.7
1,214,251 - RR42_RS26125 0.15 -0.6
1,214,400 + RR42_RS26125 0.20 -1.3
1,214,469 + RR42_RS26125 0.23 +0.2
1,214,469 + RR42_RS26125 0.23 -0.2
1,214,469 + RR42_RS26125 0.23 +0.9
1,214,470 - RR42_RS26125 0.23 -0.4
1,214,470 - RR42_RS26125 0.23 +0.4
1,214,493 + RR42_RS26125 0.24 -0.5
1,214,494 - RR42_RS26125 0.24 -0.4
1,214,494 - RR42_RS26125 0.24 -0.6
1,214,499 + RR42_RS26125 0.24 +0.4
1,214,499 + RR42_RS26125 0.24 +0.4
1,214,499 + RR42_RS26125 0.24 -0.4
1,214,520 + RR42_RS26125 0.25 +0.2
1,214,520 + RR42_RS26125 0.25 -0.8
1,214,521 - RR42_RS26125 0.25 +0.4
1,214,521 - RR42_RS26125 0.25 -0.3
1,214,758 - RR42_RS26125 0.33 +0.4
1,214,760 + RR42_RS26125 0.33 +0.1
1,214,760 + RR42_RS26125 0.33 -1.2
1,214,761 - RR42_RS26125 0.33 -0.4
1,214,761 - RR42_RS26125 0.33 +0.6
1,214,761 - RR42_RS26125 0.33 +0.3
1,214,766 + RR42_RS26125 0.34 -0.1
1,214,767 - RR42_RS26125 0.34 +0.2
1,214,767 - RR42_RS26125 0.34 +1.1

Or see this region's nucleotide sequence