Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22905 and RR42_RS22910 are separated by 14 nucleotides RR42_RS22910 and RR42_RS22915 are separated by 4 nucleotides RR42_RS22915 and RR42_RS22920 are separated by 69 nucleotides RR42_RS22920 and RR42_RS22925 are separated by 95 nucleotides
RR42_RS22905: RR42_RS22905 - myristoyl transferase, at 471,896 to 472,885
_RS22905
RR42_RS22910: RR42_RS22910 - nitrate ABC transporter ATPase, at 472,900 to 473,673
_RS22910
RR42_RS22915: RR42_RS22915 - ABC transporter permease, at 473,678 to 474,517
_RS22915
RR42_RS22920: RR42_RS22920 - hypothetical protein, at 474,587 to 475,024
_RS22920
RR42_RS22925: RR42_RS22925 - RND transporter, at 475,120 to 476,193
_RS22925
Position (kb) 473
474
475 Strain fitness (log2 ratio) -1
0
1
2 at 472.724 kb on + strand, within RR42_RS22905 at 472.725 kb on - strand, within RR42_RS22905 at 472.856 kb on + strand at 472.856 kb on + strand at 472.857 kb on - strand at 472.857 kb on - strand at 472.859 kb on + strand at 472.859 kb on + strand at 472.884 kb on - strand at 472.897 kb on + strand at 472.897 kb on + strand at 472.898 kb on - strand at 472.898 kb on - strand at 472.898 kb on - strand at 472.898 kb on - strand at 472.940 kb on - strand at 473.195 kb on + strand, within RR42_RS22910 at 473.196 kb on - strand, within RR42_RS22910 at 473.354 kb on + strand, within RR42_RS22910 at 473.355 kb on - strand, within RR42_RS22910 at 473.500 kb on + strand, within RR42_RS22910 at 473.500 kb on + strand, within RR42_RS22910 at 473.501 kb on - strand, within RR42_RS22910 at 473.501 kb on - strand, within RR42_RS22910 at 473.621 kb on - strand at 473.621 kb on - strand at 473.662 kb on + strand at 473.663 kb on - strand at 473.688 kb on + strand at 473.689 kb on - strand at 474.174 kb on + strand, within RR42_RS22915 at 474.174 kb on + strand, within RR42_RS22915 at 474.174 kb on + strand, within RR42_RS22915 at 474.175 kb on - strand, within RR42_RS22915 at 474.659 kb on - strand, within RR42_RS22920 at 474.744 kb on - strand, within RR42_RS22920 at 475.199 kb on + strand at 475.200 kb on - strand at 475.302 kb on - strand, within RR42_RS22925 at 475.302 kb on - strand, within RR42_RS22925 at 475.318 kb on + strand, within RR42_RS22925 at 475.336 kb on + strand, within RR42_RS22925 at 475.337 kb on - strand, within RR42_RS22925 at 475.337 kb on - strand, within RR42_RS22925
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 472,724 + RR42_RS22905 0.84 +1.0 472,725 - RR42_RS22905 0.84 +0.9 472,856 + +0.1 472,856 + -0.1 472,857 - -0.3 472,857 - -0.6 472,859 + +0.1 472,859 + +0.8 472,884 - -0.2 472,897 + +0.6 472,897 + +0.5 472,898 - -1.1 472,898 - +0.3 472,898 - -0.9 472,898 - +0.9 472,940 - +1.0 473,195 + RR42_RS22910 0.38 -0.9 473,196 - RR42_RS22910 0.38 -0.9 473,354 + RR42_RS22910 0.59 +0.9 473,355 - RR42_RS22910 0.59 -0.5 473,500 + RR42_RS22910 0.78 +0.0 473,500 + RR42_RS22910 0.78 +0.5 473,501 - RR42_RS22910 0.78 +0.8 473,501 - RR42_RS22910 0.78 -0.0 473,621 - -0.6 473,621 - +0.2 473,662 + -0.3 473,663 - +0.1 473,688 + +0.4 473,689 - -0.2 474,174 + RR42_RS22915 0.59 +0.4 474,174 + RR42_RS22915 0.59 +0.2 474,174 + RR42_RS22915 0.59 +0.6 474,175 - RR42_RS22915 0.59 +1.4 474,659 - RR42_RS22920 0.16 -0.2 474,744 - RR42_RS22920 0.36 -0.1 475,199 + +2.1 475,200 - -0.2 475,302 - RR42_RS22925 0.17 -0.5 475,302 - RR42_RS22925 0.17 +0.5 475,318 + RR42_RS22925 0.18 +0.7 475,336 + RR42_RS22925 0.20 +0.4 475,337 - RR42_RS22925 0.20 +0.6 475,337 - RR42_RS22925 0.20 -1.3
Or see this region's nucleotide sequence