Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20670 and RR42_RS20675 are separated by 155 nucleotides RR42_RS20675 and RR42_RS20680 are separated by 83 nucleotides RR42_RS20680 and RR42_RS20685 are separated by 35 nucleotides
RR42_RS20670: RR42_RS20670 - glutathione S-transferase, at 4,488,694 to 4,489,302
_RS20670
RR42_RS20675: RR42_RS20675 - AsnC family transcriptional regulator, at 4,489,458 to 4,489,916
_RS20675
RR42_RS20680: RR42_RS20680 - membrane protein, at 4,490,000 to 4,490,851
_RS20680
RR42_RS20685: RR42_RS20685 - lipoprotein, at 4,490,887 to 4,492,152
_RS20685
Position (kb) 4489
4490
4491 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4489.098 kb on - strand, within RR42_RS20670 at 4489.271 kb on + strand at 4489.272 kb on - strand at 4489.302 kb on + strand at 4489.303 kb on - strand at 4489.356 kb on + strand at 4489.356 kb on + strand at 4489.668 kb on - strand, within RR42_RS20675 at 4489.668 kb on - strand, within RR42_RS20675 at 4489.686 kb on + strand, within RR42_RS20675 at 4489.686 kb on + strand, within RR42_RS20675 at 4489.686 kb on + strand, within RR42_RS20675 at 4489.909 kb on + strand at 4489.909 kb on + strand at 4489.919 kb on + strand at 4489.919 kb on + strand at 4489.919 kb on + strand at 4489.920 kb on - strand at 4490.008 kb on + strand at 4490.127 kb on + strand, within RR42_RS20680 at 4490.127 kb on + strand, within RR42_RS20680 at 4490.128 kb on - strand, within RR42_RS20680 at 4490.331 kb on + strand, within RR42_RS20680 at 4490.868 kb on - strand at 4490.916 kb on - strand at 4490.916 kb on - strand at 4491.161 kb on + strand, within RR42_RS20685 at 4491.162 kb on - strand, within RR42_RS20685 at 4491.329 kb on + strand, within RR42_RS20685 at 4491.330 kb on - strand, within RR42_RS20685 at 4491.330 kb on - strand, within RR42_RS20685 at 4491.380 kb on + strand, within RR42_RS20685 at 4491.380 kb on + strand, within RR42_RS20685 at 4491.381 kb on - strand, within RR42_RS20685 at 4491.381 kb on - strand, within RR42_RS20685 at 4491.504 kb on - strand, within RR42_RS20685 at 4491.504 kb on - strand, within RR42_RS20685 at 4491.624 kb on - strand, within RR42_RS20685
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 4,489,098 - RR42_RS20670 0.66 +0.5 4,489,271 + +0.9 4,489,272 - -1.2 4,489,302 + +1.0 4,489,303 - +0.8 4,489,356 + -0.1 4,489,356 + -1.0 4,489,668 - RR42_RS20675 0.46 -1.1 4,489,668 - RR42_RS20675 0.46 -1.8 4,489,686 + RR42_RS20675 0.50 +0.9 4,489,686 + RR42_RS20675 0.50 -0.5 4,489,686 + RR42_RS20675 0.50 +0.0 4,489,909 + +1.6 4,489,909 + +0.5 4,489,919 + -0.2 4,489,919 + -0.2 4,489,919 + +0.7 4,489,920 - +0.9 4,490,008 + -3.1 4,490,127 + RR42_RS20680 0.15 +0.0 4,490,127 + RR42_RS20680 0.15 +0.0 4,490,128 - RR42_RS20680 0.15 +0.9 4,490,331 + RR42_RS20680 0.39 -0.2 4,490,868 - +0.4 4,490,916 - +0.2 4,490,916 - -1.1 4,491,161 + RR42_RS20685 0.22 -0.7 4,491,162 - RR42_RS20685 0.22 +0.1 4,491,329 + RR42_RS20685 0.35 -0.6 4,491,330 - RR42_RS20685 0.35 -0.4 4,491,330 - RR42_RS20685 0.35 -1.1 4,491,380 + RR42_RS20685 0.39 -1.1 4,491,380 + RR42_RS20685 0.39 -0.7 4,491,381 - RR42_RS20685 0.39 -0.0 4,491,381 - RR42_RS20685 0.39 -1.0 4,491,504 - RR42_RS20685 0.49 -0.1 4,491,504 - RR42_RS20685 0.49 +0.2 4,491,624 - RR42_RS20685 0.58 +0.1
Or see this region's nucleotide sequence