Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19455 and RR42_RS19460 are separated by 417 nucleotides RR42_RS19460 and RR42_RS19465 are separated by 81 nucleotides RR42_RS19465 and RR42_RS19470 are separated by 399 nucleotides
RR42_RS19455: RR42_RS19455 - NAD(P)H dehydrogenase, at 4,202,892 to 4,203,473
_RS19455
RR42_RS19460: RR42_RS19460 - GCN5 family acetyltransferase, at 4,203,891 to 4,204,589
_RS19460
RR42_RS19465: RR42_RS19465 - AsnC family transcriptional regulator, at 4,204,671 to 4,205,162
_RS19465
RR42_RS19470: RR42_RS19470 - hypothetical protein, at 4,205,562 to 4,206,134
_RS19470
Position (kb)
4203
4204
4205 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4202.970 kb on - strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.116 kb on - strand, within RR42_RS19455 at 4203.116 kb on - strand, within RR42_RS19455 at 4203.190 kb on + strand, within RR42_RS19455 at 4203.191 kb on - strand, within RR42_RS19455 at 4203.250 kb on + strand, within RR42_RS19455 at 4203.250 kb on + strand, within RR42_RS19455 at 4203.250 kb on + strand, within RR42_RS19455 at 4203.251 kb on - strand, within RR42_RS19455 at 4203.251 kb on - strand, within RR42_RS19455 at 4203.251 kb on - strand, within RR42_RS19455 at 4203.312 kb on + strand, within RR42_RS19455 at 4203.312 kb on + strand, within RR42_RS19455 at 4203.329 kb on - strand, within RR42_RS19455 at 4203.335 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.338 kb on - strand, within RR42_RS19455 at 4203.338 kb on - strand, within RR42_RS19455 at 4203.338 kb on - strand, within RR42_RS19455 at 4203.346 kb on + strand, within RR42_RS19455 at 4203.347 kb on - strand, within RR42_RS19455 at 4203.347 kb on - strand, within RR42_RS19455 at 4203.436 kb on + strand at 4203.436 kb on + strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.440 kb on + strand at 4203.440 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.532 kb on - strand at 4203.532 kb on - strand at 4203.686 kb on + strand at 4203.686 kb on + strand at 4203.687 kb on - strand at 4203.697 kb on - strand at 4203.742 kb on + strand at 4203.742 kb on + strand at 4203.743 kb on - strand at 4203.743 kb on - strand at 4203.764 kb on + strand at 4203.807 kb on - strand at 4203.807 kb on - strand at 4203.807 kb on - strand at 4203.855 kb on + strand at 4203.855 kb on + strand at 4203.856 kb on - strand at 4203.856 kb on - strand at 4203.861 kb on + strand at 4203.861 kb on + strand at 4203.871 kb on + strand at 4203.871 kb on + strand at 4203.872 kb on - strand at 4203.872 kb on - strand at 4203.872 kb on - strand at 4204.110 kb on + strand, within RR42_RS19460 at 4204.273 kb on + strand, within RR42_RS19460 at 4204.274 kb on - strand, within RR42_RS19460 at 4204.274 kb on - strand, within RR42_RS19460 at 4204.335 kb on + strand, within RR42_RS19460 at 4204.335 kb on + strand, within RR42_RS19460 at 4204.336 kb on - strand, within RR42_RS19460 at 4204.405 kb on - strand, within RR42_RS19460 at 4204.405 kb on - strand, within RR42_RS19460 at 4204.428 kb on + strand, within RR42_RS19460 at 4204.429 kb on - strand, within RR42_RS19460 at 4204.503 kb on + strand, within RR42_RS19460 at 4204.503 kb on + strand, within RR42_RS19460 at 4204.503 kb on + strand, within RR42_RS19460 at 4204.503 kb on + strand, within RR42_RS19460 at 4204.503 kb on + strand, within RR42_RS19460 at 4204.504 kb on - strand, within RR42_RS19460 at 4204.504 kb on - strand, within RR42_RS19460 at 4204.504 kb on - strand, within RR42_RS19460 at 4204.504 kb on - strand, within RR42_RS19460 at 4204.734 kb on + strand, within RR42_RS19465 at 4204.735 kb on - strand, within RR42_RS19465 at 4204.807 kb on + strand, within RR42_RS19465 at 4204.807 kb on + strand, within RR42_RS19465 at 4204.807 kb on + strand, within RR42_RS19465 at 4204.807 kb on + strand, within RR42_RS19465 at 4204.807 kb on + strand, within RR42_RS19465 at 4204.808 kb on - strand, within RR42_RS19465 at 4204.941 kb on + strand, within RR42_RS19465 at 4204.941 kb on + strand, within RR42_RS19465 at 4204.941 kb on + strand, within RR42_RS19465 at 4204.941 kb on + strand, within RR42_RS19465 at 4204.942 kb on - strand, within RR42_RS19465 at 4204.942 kb on - strand, within RR42_RS19465 at 4204.942 kb on - strand, within RR42_RS19465 at 4204.942 kb on - strand, within RR42_RS19465 at 4204.942 kb on - strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.950 kb on - strand, within RR42_RS19465 at 4204.950 kb on - strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.952 kb on - strand, within RR42_RS19465 at 4204.952 kb on - strand, within RR42_RS19465 at 4204.952 kb on - strand, within RR42_RS19465 at 4204.952 kb on - strand, within RR42_RS19465 at 4204.952 kb on - strand, within RR42_RS19465 at 4205.230 kb on + strand at 4205.231 kb on - strand at 4205.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 4,202,970 - RR42_RS19455 0.13 -0.4 4,203,076 + RR42_RS19455 0.32 +0.1 4,203,076 + RR42_RS19455 0.32 -0.5 4,203,076 + RR42_RS19455 0.32 +0.2 4,203,076 + RR42_RS19455 0.32 +0.8 4,203,076 + RR42_RS19455 0.32 -0.7 4,203,076 + RR42_RS19455 0.32 +0.0 4,203,077 - RR42_RS19455 0.32 +2.5 4,203,077 - RR42_RS19455 0.32 +0.2 4,203,077 - RR42_RS19455 0.32 +0.1 4,203,077 - RR42_RS19455 0.32 -1.9 4,203,116 - RR42_RS19455 0.38 +1.4 4,203,116 - RR42_RS19455 0.38 +0.7 4,203,190 + RR42_RS19455 0.51 +0.9 4,203,191 - RR42_RS19455 0.51 -0.1 4,203,250 + RR42_RS19455 0.62 -3.0 4,203,250 + RR42_RS19455 0.62 +0.5 4,203,250 + RR42_RS19455 0.62 -0.1 4,203,251 - RR42_RS19455 0.62 -0.9 4,203,251 - RR42_RS19455 0.62 +0.1 4,203,251 - RR42_RS19455 0.62 +2.1 4,203,312 + RR42_RS19455 0.72 -0.2 4,203,312 + RR42_RS19455 0.72 -0.6 4,203,329 - RR42_RS19455 0.75 -0.2 4,203,335 + RR42_RS19455 0.76 -0.3 4,203,337 + RR42_RS19455 0.76 +1.1 4,203,337 + RR42_RS19455 0.76 -0.0 4,203,337 + RR42_RS19455 0.76 +0.2 4,203,337 + RR42_RS19455 0.76 -1.5 4,203,337 + RR42_RS19455 0.76 -1.8 4,203,337 + RR42_RS19455 0.76 +1.2 4,203,337 + RR42_RS19455 0.76 +1.1 4,203,337 + RR42_RS19455 0.76 -0.7 4,203,337 + RR42_RS19455 0.76 +1.1 4,203,337 + RR42_RS19455 0.76 +0.6 4,203,338 - RR42_RS19455 0.77 -0.4 4,203,338 - RR42_RS19455 0.77 -0.8 4,203,338 - RR42_RS19455 0.77 +0.3 4,203,346 + RR42_RS19455 0.78 +0.6 4,203,347 - RR42_RS19455 0.78 -0.1 4,203,347 - RR42_RS19455 0.78 -0.7 4,203,436 + +0.8 4,203,436 + +3.2 4,203,437 - -0.4 4,203,437 - -0.5 4,203,437 - -0.8 4,203,437 - +0.3 4,203,437 - +0.4 4,203,437 - +0.7 4,203,440 + -0.2 4,203,440 + -0.2 4,203,531 + -0.2 4,203,531 + -0.5 4,203,531 + -0.6 4,203,531 + +1.2 4,203,531 + +0.0 4,203,531 + -1.1 4,203,532 - +1.2 4,203,532 - -1.2 4,203,686 + +0.8 4,203,686 + +0.3 4,203,687 - -1.5 4,203,697 - -2.2 4,203,742 + -0.3 4,203,742 + +0.2 4,203,743 - -0.3 4,203,743 - +0.6 4,203,764 + +0.2 4,203,807 - -1.6 4,203,807 - +0.3 4,203,807 - -0.1 4,203,855 + +0.1 4,203,855 + +0.9 4,203,856 - +1.4 4,203,856 - +0.2 4,203,861 + +0.5 4,203,861 + +0.5 4,203,871 + -1.3 4,203,871 + -0.5 4,203,872 - -0.3 4,203,872 - +0.9 4,203,872 - -0.1 4,204,110 + RR42_RS19460 0.31 +1.0 4,204,273 + RR42_RS19460 0.55 -0.5 4,204,274 - RR42_RS19460 0.55 +0.3 4,204,274 - RR42_RS19460 0.55 -0.7 4,204,335 + RR42_RS19460 0.64 -0.8 4,204,335 + RR42_RS19460 0.64 +0.1 4,204,336 - RR42_RS19460 0.64 +1.7 4,204,405 - RR42_RS19460 0.74 +0.9 4,204,405 - RR42_RS19460 0.74 +0.1 4,204,428 + RR42_RS19460 0.77 -0.4 4,204,429 - RR42_RS19460 0.77 +0.2 4,204,503 + RR42_RS19460 0.88 -0.4 4,204,503 + RR42_RS19460 0.88 +0.2 4,204,503 + RR42_RS19460 0.88 -0.1 4,204,503 + RR42_RS19460 0.88 -1.2 4,204,503 + RR42_RS19460 0.88 -0.9 4,204,504 - RR42_RS19460 0.88 -1.3 4,204,504 - RR42_RS19460 0.88 -0.1 4,204,504 - RR42_RS19460 0.88 -0.6 4,204,504 - RR42_RS19460 0.88 +0.3 4,204,734 + RR42_RS19465 0.13 +0.6 4,204,735 - RR42_RS19465 0.13 +1.4 4,204,807 + RR42_RS19465 0.28 +1.6 4,204,807 + RR42_RS19465 0.28 +0.9 4,204,807 + RR42_RS19465 0.28 +0.9 4,204,807 + RR42_RS19465 0.28 -0.1 4,204,807 + RR42_RS19465 0.28 +1.4 4,204,808 - RR42_RS19465 0.28 +1.7 4,204,941 + RR42_RS19465 0.55 +0.8 4,204,941 + RR42_RS19465 0.55 +0.7 4,204,941 + RR42_RS19465 0.55 +1.1 4,204,941 + RR42_RS19465 0.55 +0.4 4,204,942 - RR42_RS19465 0.55 +0.5 4,204,942 - RR42_RS19465 0.55 +1.2 4,204,942 - RR42_RS19465 0.55 +0.5 4,204,942 - RR42_RS19465 0.55 +1.7 4,204,942 - RR42_RS19465 0.55 +1.1 4,204,949 + RR42_RS19465 0.57 +0.6 4,204,949 + RR42_RS19465 0.57 +1.0 4,204,949 + RR42_RS19465 0.57 +1.7 4,204,949 + RR42_RS19465 0.57 +2.0 4,204,949 + RR42_RS19465 0.57 +1.2 4,204,949 + RR42_RS19465 0.57 +0.8 4,204,950 - RR42_RS19465 0.57 +1.3 4,204,950 - RR42_RS19465 0.57 +2.2 4,204,951 + RR42_RS19465 0.57 -0.3 4,204,951 + RR42_RS19465 0.57 +0.7 4,204,951 + RR42_RS19465 0.57 +0.4 4,204,951 + RR42_RS19465 0.57 +1.6 4,204,951 + RR42_RS19465 0.57 +0.9 4,204,951 + RR42_RS19465 0.57 +1.1 4,204,952 - RR42_RS19465 0.57 +1.1 4,204,952 - RR42_RS19465 0.57 -0.3 4,204,952 - RR42_RS19465 0.57 +2.1 4,204,952 - RR42_RS19465 0.57 +1.1 4,204,952 - RR42_RS19465 0.57 +0.9 4,205,230 + +0.5 4,205,231 - -1.7 4,205,316 + +0.4
Or see this region's nucleotide sequence