Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03520 and RR42_RS03525 are separated by 128 nucleotides RR42_RS03525 and RR42_RS03530 are separated by 75 nucleotides RR42_RS03530 and RR42_RS03535 are separated by 6 nucleotides RR42_RS03535 and RR42_RS03540 are separated by 10 nucleotides
RR42_RS03520: RR42_RS03520 - type VI secretion protein EvpB, at 782,557 to 784,050
_RS03520
RR42_RS03525: RR42_RS03525 - type VI secretion system effector, at 784,179 to 784,664
_RS03525
RR42_RS03530: RR42_RS03530 - hypothetical protein, at 784,740 to 784,970
_RS03530
RR42_RS03535: RR42_RS03535 - hypothetical protein, at 784,977 to 785,339
_RS03535
RR42_RS03540: RR42_RS03540 - type VI secretion protein ImpA, at 785,350 to 787,818
_RS03540
Position (kb) 784
785 Strain fitness (log2 ratio) -2
-1
0
1 at 783.266 kb on - strand, within RR42_RS03520 at 783.266 kb on - strand, within RR42_RS03520 at 783.266 kb on - strand, within RR42_RS03520 at 783.379 kb on + strand, within RR42_RS03520 at 783.379 kb on + strand, within RR42_RS03520 at 783.380 kb on - strand, within RR42_RS03520 at 783.380 kb on - strand, within RR42_RS03520 at 783.380 kb on - strand, within RR42_RS03520 at 783.439 kb on + strand, within RR42_RS03520 at 783.439 kb on + strand, within RR42_RS03520 at 783.601 kb on - strand, within RR42_RS03520 at 783.619 kb on - strand, within RR42_RS03520 at 783.677 kb on - strand, within RR42_RS03520 at 783.677 kb on - strand, within RR42_RS03520 at 783.844 kb on + strand, within RR42_RS03520 at 783.844 kb on + strand, within RR42_RS03520 at 783.845 kb on - strand, within RR42_RS03520 at 783.845 kb on - strand, within RR42_RS03520 at 783.845 kb on - strand, within RR42_RS03520 at 783.950 kb on - strand at 783.950 kb on - strand at 784.159 kb on + strand at 784.160 kb on - strand at 784.393 kb on - strand, within RR42_RS03525 at 784.465 kb on - strand, within RR42_RS03525 at 784.699 kb on + strand at 784.699 kb on + strand at 784.779 kb on + strand, within RR42_RS03530 at 784.968 kb on + strand at 785.320 kb on - strand at 785.320 kb on - strand at 785.320 kb on - strand at 785.500 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 783,266 - RR42_RS03520 0.47 -0.4 783,266 - RR42_RS03520 0.47 -0.4 783,266 - RR42_RS03520 0.47 -2.6 783,379 + RR42_RS03520 0.55 +0.0 783,379 + RR42_RS03520 0.55 +0.1 783,380 - RR42_RS03520 0.55 +0.1 783,380 - RR42_RS03520 0.55 -0.5 783,380 - RR42_RS03520 0.55 +0.8 783,439 + RR42_RS03520 0.59 +0.7 783,439 + RR42_RS03520 0.59 -0.4 783,601 - RR42_RS03520 0.70 +0.0 783,619 - RR42_RS03520 0.71 -1.6 783,677 - RR42_RS03520 0.75 +0.2 783,677 - RR42_RS03520 0.75 -0.2 783,844 + RR42_RS03520 0.86 -2.3 783,844 + RR42_RS03520 0.86 +1.3 783,845 - RR42_RS03520 0.86 +0.5 783,845 - RR42_RS03520 0.86 +0.8 783,845 - RR42_RS03520 0.86 +0.9 783,950 - +0.6 783,950 - +1.2 784,159 + +0.2 784,160 - +0.6 784,393 - RR42_RS03525 0.44 +0.5 784,465 - RR42_RS03525 0.59 -0.2 784,699 + +0.3 784,699 + -1.8 784,779 + RR42_RS03530 0.17 -0.2 784,968 + -0.0 785,320 - -0.2 785,320 - -0.5 785,320 - -0.8 785,500 + -1.1
Or see this region's nucleotide sequence