Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02575

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02570 and RR42_RS02575 are separated by 364 nucleotidesRR42_RS02575 and RR42_RS02580 are separated by 63 nucleotidesRR42_RS02580 and RR42_RS02585 are separated by 11 nucleotides RR42_RS02570: RR42_RS02570 - glutamate dehydrogenase, at 577,482 to 578,789 _RS02570 RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053 _RS02575 RR42_RS02580: RR42_RS02580 - amino acid ABC transporter permease, at 580,117 to 580,845 _RS02580 RR42_RS02585: RR42_RS02585 - amino acid ABC transporter permease, at 580,857 to 581,540 _RS02585 Position (kb) 579 580 581Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 578.283 kb on + strand, within RR42_RS02570at 578.283 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.535 kb on - strand, within RR42_RS02570at 578.586 kb on + strand, within RR42_RS02570at 578.599 kb on + strand, within RR42_RS02570at 578.600 kb on - strand, within RR42_RS02570at 578.712 kb on - strandat 578.850 kb on + strandat 578.901 kb on + strandat 578.901 kb on + strandat 578.902 kb on - strandat 579.091 kb on - strandat 579.091 kb on - strandat 579.091 kb on - strandat 579.153 kb on + strandat 579.154 kb on - strandat 579.154 kb on - strandat 579.154 kb on - strandat 579.271 kb on - strand, within RR42_RS02575at 579.271 kb on - strand, within RR42_RS02575at 579.271 kb on - strand, within RR42_RS02575at 579.307 kb on + strand, within RR42_RS02575at 579.307 kb on + strand, within RR42_RS02575at 579.308 kb on - strand, within RR42_RS02575at 579.308 kb on - strand, within RR42_RS02575at 579.343 kb on + strand, within RR42_RS02575at 579.344 kb on - strand, within RR42_RS02575at 579.344 kb on - strand, within RR42_RS02575at 579.844 kb on + strand, within RR42_RS02575at 579.845 kb on - strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 580.054 kb on + strandat 580.055 kb on - strandat 580.123 kb on + strandat 580.123 kb on + strandat 580.123 kb on + strandat 580.124 kb on - strandat 580.124 kb on - strandat 580.124 kb on - strandat 580.142 kb on + strandat 580.143 kb on - strandat 580.143 kb on - strandat 580.143 kb on - strandat 580.174 kb on + strandat 580.174 kb on + strandat 580.175 kb on - strandat 580.316 kb on - strand, within RR42_RS02580at 580.316 kb on - strand, within RR42_RS02580at 580.316 kb on - strand, within RR42_RS02580at 580.332 kb on + strand, within RR42_RS02580at 580.333 kb on - strand, within RR42_RS02580at 580.335 kb on + strand, within RR42_RS02580at 580.570 kb on + strand, within RR42_RS02580at 580.571 kb on - strand, within RR42_RS02580at 580.576 kb on + strand, within RR42_RS02580at 580.577 kb on - strand, within RR42_RS02580at 580.577 kb on - strand, within RR42_RS02580at 580.583 kb on + strand, within RR42_RS02580at 580.583 kb on + strand, within RR42_RS02580at 580.714 kb on + strand, within RR42_RS02580at 580.714 kb on + strand, within RR42_RS02580at 580.715 kb on - strand, within RR42_RS02580at 580.729 kb on + strand, within RR42_RS02580at 580.759 kb on + strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.843 kb on + strandat 580.843 kb on + strandat 580.843 kb on + strandat 580.844 kb on - strandat 580.844 kb on - strandat 580.844 kb on - strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 581.037 kb on + strand, within RR42_RS02585at 581.037 kb on + strand, within RR42_RS02585at 581.037 kb on + strand, within RR42_RS02585at 581.038 kb on - strand, within RR42_RS02585at 581.038 kb on - strand, within RR42_RS02585

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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578,283 + RR42_RS02570 0.61 -1.5
578,283 + RR42_RS02570 0.61 +0.2
578,322 + RR42_RS02570 0.64 -3.6
578,322 + RR42_RS02570 0.64 -0.1
578,322 + RR42_RS02570 0.64 -3.2
578,323 - RR42_RS02570 0.64 -1.9
578,323 - RR42_RS02570 0.64 -2.4
578,323 - RR42_RS02570 0.64 -1.5
578,535 - RR42_RS02570 0.81 +0.2
578,586 + RR42_RS02570 0.84 -0.6
578,599 + RR42_RS02570 0.85 -1.6
578,600 - RR42_RS02570 0.85 -1.8
578,712 - -0.4
578,850 + -0.3
578,901 + +0.6
578,901 + +0.1
578,902 - -1.4
579,091 - -1.5
579,091 - -0.6
579,091 - -0.8
579,153 + +0.1
579,154 - -0.5
579,154 - -2.2
579,154 - +0.2
579,271 - RR42_RS02575 0.13 -0.3
579,271 - RR42_RS02575 0.13 +0.4
579,271 - RR42_RS02575 0.13 -0.8
579,307 + RR42_RS02575 0.17 +0.2
579,307 + RR42_RS02575 0.17 -0.9
579,308 - RR42_RS02575 0.17 -1.9
579,308 - RR42_RS02575 0.17 -0.2
579,343 + RR42_RS02575 0.21 -1.0
579,344 - RR42_RS02575 0.21 -0.4
579,344 - RR42_RS02575 0.21 -0.8
579,844 + RR42_RS02575 0.77 -0.8
579,845 - RR42_RS02575 0.77 -1.3
579,940 + RR42_RS02575 0.87 +1.8
579,940 + RR42_RS02575 0.87 -0.9
579,940 + RR42_RS02575 0.87 -0.9
580,054 + +1.0
580,055 - -0.2
580,123 + -0.5
580,123 + -0.6
580,123 + -0.4
580,124 - -0.0
580,124 - -1.7
580,124 - -1.5
580,142 + -0.7
580,143 - -1.0
580,143 - -2.1
580,143 - +0.1
580,174 + -0.8
580,174 + -0.7
580,175 - -0.6
580,316 - RR42_RS02580 0.27 -0.4
580,316 - RR42_RS02580 0.27 -0.5
580,316 - RR42_RS02580 0.27 -1.1
580,332 + RR42_RS02580 0.29 -0.8
580,333 - RR42_RS02580 0.30 -1.5
580,335 + RR42_RS02580 0.30 -1.5
580,570 + RR42_RS02580 0.62 +0.9
580,571 - RR42_RS02580 0.62 -1.8
580,576 + RR42_RS02580 0.63 -0.5
580,577 - RR42_RS02580 0.63 -0.5
580,577 - RR42_RS02580 0.63 +0.1
580,583 + RR42_RS02580 0.64 -0.4
580,583 + RR42_RS02580 0.64 -0.5
580,714 + RR42_RS02580 0.82 +0.2
580,714 + RR42_RS02580 0.82 -0.3
580,715 - RR42_RS02580 0.82 +0.2
580,729 + RR42_RS02580 0.84 -0.8
580,759 + RR42_RS02580 0.88 -0.8
580,760 - RR42_RS02580 0.88 -0.1
580,760 - RR42_RS02580 0.88 -0.2
580,760 - RR42_RS02580 0.88 -0.9
580,843 + -0.5
580,843 + +1.0
580,843 + -2.3
580,844 - -0.9
580,844 - -1.7
580,844 - +0.2
580,863 + -0.1
580,863 + -0.9
580,863 + -2.2
580,863 + -0.3
580,864 - -0.8
580,864 - -0.4
580,864 - -0.3
580,864 - +0.6
580,864 - -0.3
580,865 + +1.8
580,865 + -0.4
580,865 + +0.5
580,865 + -1.4
580,865 + +0.1
580,865 + -1.3
580,866 - -0.2
580,866 - -1.2
580,866 - -0.1
580,866 - -1.0
580,866 - -0.8
580,866 - -1.6
580,866 - -0.9
580,866 - -0.2
581,037 + RR42_RS02585 0.26 -0.1
581,037 + RR42_RS02585 0.26 -0.8
581,037 + RR42_RS02585 0.26 -0.7
581,038 - RR42_RS02585 0.26 -1.2
581,038 - RR42_RS02585 0.26 -0.5

Or see this region's nucleotide sequence