Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01630 and RR42_RS01635 are separated by 24 nucleotides RR42_RS01635 and RR42_RS01640 are separated by 26 nucleotides RR42_RS01640 and RR42_RS01645 are separated by 87 nucleotides
RR42_RS01630: RR42_RS01630 - branched-chain amino acid ABC transporter ATP-binding protein, at 371,942 to 372,865
_RS01630
RR42_RS01635: RR42_RS01635 - ABC transporter permease, at 372,890 to 373,804
_RS01635
RR42_RS01640: RR42_RS01640 - ABC transporter permease, at 373,831 to 374,907
_RS01640
RR42_RS01645: RR42_RS01645 - ABC transporter permease, at 374,995 to 376,329
_RS01645
Position (kb) 373
374
375 Strain fitness (log2 ratio) -2
-1
0
1 at 372.924 kb on + strand at 372.974 kb on + strand at 372.975 kb on - strand at 373.019 kb on + strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.460 kb on - strand, within RR42_RS01635 at 373.460 kb on - strand, within RR42_RS01635 at 373.597 kb on + strand, within RR42_RS01635 at 373.664 kb on + strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.731 kb on - strand at 373.731 kb on - strand at 373.731 kb on - strand at 373.867 kb on + strand at 373.867 kb on + strand at 373.868 kb on - strand at 373.868 kb on - strand at 373.868 kb on - strand at 374.031 kb on + strand, within RR42_RS01640 at 374.032 kb on - strand, within RR42_RS01640 at 374.105 kb on - strand, within RR42_RS01640 at 374.152 kb on - strand, within RR42_RS01640 at 374.224 kb on + strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.570 kb on - strand, within RR42_RS01640 at 374.582 kb on - strand, within RR42_RS01640 at 375.027 kb on - strand at 375.115 kb on + strand at 375.131 kb on - strand, within RR42_RS01645 at 375.172 kb on + strand, within RR42_RS01645 at 375.247 kb on + strand, within RR42_RS01645 at 375.248 kb on - strand, within RR42_RS01645 at 375.274 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.547 kb on + strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.697 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 372,924 + +0.2 372,974 + -0.4 372,975 - +0.8 373,019 + RR42_RS01635 0.14 +0.6 373,020 - RR42_RS01635 0.14 -0.1 373,020 - RR42_RS01635 0.14 -0.2 373,020 - RR42_RS01635 0.14 -0.3 373,020 - RR42_RS01635 0.14 -0.1 373,460 - RR42_RS01635 0.62 +0.5 373,460 - RR42_RS01635 0.62 -0.4 373,597 + RR42_RS01635 0.77 -1.1 373,664 + RR42_RS01635 0.85 -0.6 373,665 - RR42_RS01635 0.85 -0.1 373,665 - RR42_RS01635 0.85 +0.5 373,665 - RR42_RS01635 0.85 -1.2 373,731 - -1.9 373,731 - -0.5 373,731 - -0.2 373,867 + -0.0 373,867 + -0.2 373,868 - -0.9 373,868 - -1.2 373,868 - +0.7 374,031 + RR42_RS01640 0.19 -0.4 374,032 - RR42_RS01640 0.19 +0.0 374,105 - RR42_RS01640 0.25 -0.5 374,152 - RR42_RS01640 0.30 -0.3 374,224 + RR42_RS01640 0.36 +0.2 374,375 - RR42_RS01640 0.51 -0.2 374,375 - RR42_RS01640 0.51 +0.7 374,570 - RR42_RS01640 0.69 -0.2 374,582 - RR42_RS01640 0.70 -0.3 375,027 - +0.1 375,115 + -1.3 375,131 - RR42_RS01645 0.10 -0.3 375,172 + RR42_RS01645 0.13 -1.2 375,247 + RR42_RS01645 0.19 -0.4 375,248 - RR42_RS01645 0.19 -0.3 375,274 + RR42_RS01645 0.21 +0.0 375,541 + RR42_RS01645 0.41 +0.2 375,541 + RR42_RS01645 0.41 -0.4 375,541 + RR42_RS01645 0.41 +0.6 375,547 + RR42_RS01645 0.41 +0.3 375,563 - RR42_RS01645 0.43 -0.9 375,563 - RR42_RS01645 0.43 +0.8 375,697 + RR42_RS01645 0.53 -1.3 375,844 + RR42_RS01645 0.64 -0.2 375,844 + RR42_RS01645 0.64 -0.6 375,844 + RR42_RS01645 0.64 +0.5 375,844 + RR42_RS01645 0.64 -1.6 375,844 + RR42_RS01645 0.64 -0.8 375,845 - RR42_RS01645 0.64 +0.2 375,845 - RR42_RS01645 0.64 -0.3 375,846 + RR42_RS01645 0.64 -0.5 375,846 + RR42_RS01645 0.64 +0.3
Or see this region's nucleotide sequence