Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01490 and RR42_RS01495 are separated by 17 nucleotides RR42_RS01495 and RR42_RS01500 are separated by 322 nucleotides RR42_RS01500 and RR42_RS01505 are separated by 149 nucleotides
RR42_RS01490: RR42_RS01490 - histidine kinase, at 336,120 to 337,553
_RS01490
RR42_RS01495: RR42_RS01495 - diguanylate cyclase, at 337,571 to 339,352
_RS01495
RR42_RS01500: RR42_RS01500 - hypothetical protein, at 339,675 to 340,094
_RS01500
RR42_RS01505: RR42_RS01505 - tRNA-Cys, at 340,244 to 340,318
_RS01505
Position (kb) 337
338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2 at 336.606 kb on + strand, within RR42_RS01490 at 336.606 kb on + strand, within RR42_RS01490 at 336.607 kb on - strand, within RR42_RS01490 at 336.607 kb on - strand, within RR42_RS01490 at 337.084 kb on + strand, within RR42_RS01490 at 337.084 kb on + strand, within RR42_RS01490 at 337.084 kb on + strand, within RR42_RS01490 at 337.170 kb on - strand, within RR42_RS01490 at 337.242 kb on + strand, within RR42_RS01490 at 337.255 kb on + strand, within RR42_RS01490 at 337.255 kb on + strand, within RR42_RS01490 at 337.256 kb on - strand, within RR42_RS01490 at 337.357 kb on + strand, within RR42_RS01490 at 337.358 kb on - strand, within RR42_RS01490 at 337.380 kb on + strand, within RR42_RS01490 at 337.381 kb on - strand, within RR42_RS01490 at 337.524 kb on + strand at 337.524 kb on + strand at 337.525 kb on - strand at 338.096 kb on + strand, within RR42_RS01495 at 338.097 kb on - strand, within RR42_RS01495 at 338.097 kb on - strand, within RR42_RS01495 at 338.100 kb on + strand, within RR42_RS01495 at 338.100 kb on + strand, within RR42_RS01495 at 338.100 kb on + strand, within RR42_RS01495 at 338.101 kb on - strand, within RR42_RS01495 at 338.410 kb on - strand, within RR42_RS01495 at 338.439 kb on + strand, within RR42_RS01495 at 338.439 kb on + strand, within RR42_RS01495 at 338.439 kb on + strand, within RR42_RS01495 at 338.439 kb on + strand, within RR42_RS01495 at 338.440 kb on - strand, within RR42_RS01495 at 338.440 kb on - strand, within RR42_RS01495 at 338.440 kb on - strand, within RR42_RS01495 at 338.440 kb on - strand, within RR42_RS01495 at 338.820 kb on + strand, within RR42_RS01495 at 338.858 kb on + strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.150 kb on + strand, within RR42_RS01495 at 339.275 kb on + strand at 339.275 kb on + strand at 339.275 kb on + strand at 339.336 kb on + strand at 339.337 kb on - strand at 339.337 kb on - strand at 339.340 kb on + strand at 339.341 kb on - strand at 339.482 kb on + strand at 339.482 kb on + strand at 339.482 kb on + strand at 339.519 kb on + strand at 339.562 kb on + strand at 339.563 kb on - strand at 339.633 kb on + strand at 339.642 kb on + strand at 339.912 kb on + strand, within RR42_RS01500 at 339.912 kb on + strand, within RR42_RS01500 at 339.913 kb on - strand, within RR42_RS01500 at 339.913 kb on - strand, within RR42_RS01500 at 340.161 kb on + strand at 340.162 kb on - strand at 340.162 kb on - strand at 340.285 kb on + strand, within RR42_RS01505 at 340.321 kb on - strand at 340.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 336,606 + RR42_RS01490 0.34 -0.8 336,606 + RR42_RS01490 0.34 -1.8 336,607 - RR42_RS01490 0.34 +0.5 336,607 - RR42_RS01490 0.34 -0.2 337,084 + RR42_RS01490 0.67 -0.3 337,084 + RR42_RS01490 0.67 +0.1 337,084 + RR42_RS01490 0.67 -0.1 337,170 - RR42_RS01490 0.73 +0.8 337,242 + RR42_RS01490 0.78 -1.2 337,255 + RR42_RS01490 0.79 -0.3 337,255 + RR42_RS01490 0.79 -1.3 337,256 - RR42_RS01490 0.79 +0.8 337,357 + RR42_RS01490 0.86 +0.2 337,358 - RR42_RS01490 0.86 -0.4 337,380 + RR42_RS01490 0.88 +0.4 337,381 - RR42_RS01490 0.88 -0.3 337,524 + -0.1 337,524 + -0.5 337,525 - -0.7 338,096 + RR42_RS01495 0.29 +1.8 338,097 - RR42_RS01495 0.30 +1.1 338,097 - RR42_RS01495 0.30 +0.5 338,100 + RR42_RS01495 0.30 +0.2 338,100 + RR42_RS01495 0.30 -0.1 338,100 + RR42_RS01495 0.30 +1.8 338,101 - RR42_RS01495 0.30 -0.7 338,410 - RR42_RS01495 0.47 -0.6 338,439 + RR42_RS01495 0.49 +0.0 338,439 + RR42_RS01495 0.49 -0.1 338,439 + RR42_RS01495 0.49 -0.4 338,439 + RR42_RS01495 0.49 -0.9 338,440 - RR42_RS01495 0.49 -0.1 338,440 - RR42_RS01495 0.49 -0.8 338,440 - RR42_RS01495 0.49 +0.5 338,440 - RR42_RS01495 0.49 +0.7 338,820 + RR42_RS01495 0.70 -0.8 338,858 + RR42_RS01495 0.72 -1.0 339,131 - RR42_RS01495 0.88 +0.5 339,131 - RR42_RS01495 0.88 -0.5 339,131 - RR42_RS01495 0.88 -0.5 339,131 - RR42_RS01495 0.88 -1.0 339,150 + RR42_RS01495 0.89 -0.2 339,275 + +0.1 339,275 + -0.0 339,275 + +0.6 339,336 + -0.8 339,337 - +0.3 339,337 - +0.0 339,340 + -0.3 339,341 - +0.7 339,482 + +0.1 339,482 + -0.1 339,482 + -1.6 339,519 + +0.3 339,562 + -1.8 339,563 - +0.6 339,633 + -1.5 339,642 + -0.0 339,912 + RR42_RS01500 0.56 -1.3 339,912 + RR42_RS01500 0.56 -0.3 339,913 - RR42_RS01500 0.57 +0.5 339,913 - RR42_RS01500 0.57 -0.0 340,161 + -1.2 340,162 - -0.4 340,162 - +0.1 340,285 + RR42_RS01505 0.55 -1.1 340,321 - +0.8 340,321 - +0.4
Or see this region's nucleotide sequence