Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00230 and RR42_RS00235 are separated by 135 nucleotides RR42_RS00235 and RR42_RS00240 are separated by 93 nucleotides RR42_RS00240 and RR42_RS00245 are separated by 253 nucleotides
RR42_RS00230: RR42_RS00230 - ADP-ribosylglycohydrolase, at 71,437 to 72,531
_RS00230
RR42_RS00235: RR42_RS00235 - membrane protein, at 72,667 to 73,938
_RS00235
RR42_RS00240: RR42_RS00240 - nucleotide pyrophosphohydrolase, at 74,032 to 74,367
_RS00240
RR42_RS00245: RR42_RS00245 - microcystin degradation protein MlrC, at 74,621 to 76,102
_RS00245
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.704 kb on + strand, within RR42_RS00230 at 71.705 kb on - strand, within RR42_RS00230 at 71.782 kb on + strand, within RR42_RS00230 at 72.517 kb on + strand at 72.561 kb on + strand at 72.573 kb on + strand at 73.108 kb on - strand, within RR42_RS00235 at 73.500 kb on - strand, within RR42_RS00235 at 73.558 kb on + strand, within RR42_RS00235 at 73.559 kb on - strand, within RR42_RS00235 at 73.771 kb on - strand, within RR42_RS00235 at 73.850 kb on - strand at 73.944 kb on - strand at 74.010 kb on + strand at 74.104 kb on + strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.257 kb on + strand, within RR42_RS00240 at 74.258 kb on - strand, within RR42_RS00240 at 74.659 kb on + strand at 74.660 kb on - strand at 74.660 kb on - strand at 74.850 kb on - strand, within RR42_RS00245
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 71,704 + RR42_RS00230 0.24 -0.4 71,705 - RR42_RS00230 0.24 +0.8 71,782 + RR42_RS00230 0.32 -0.3 72,517 + -1.7 72,561 + -0.3 72,573 + +1.1 73,108 - RR42_RS00235 0.35 +1.1 73,500 - RR42_RS00235 0.65 -1.8 73,558 + RR42_RS00235 0.70 -0.9 73,559 - RR42_RS00235 0.70 -0.3 73,771 - RR42_RS00235 0.87 -0.7 73,850 - -0.6 73,944 - -0.7 74,010 + -0.5 74,104 + RR42_RS00240 0.21 +0.5 74,105 - RR42_RS00240 0.22 -0.5 74,105 - RR42_RS00240 0.22 +1.9 74,105 - RR42_RS00240 0.22 -0.0 74,105 - RR42_RS00240 0.22 -0.4 74,257 + RR42_RS00240 0.67 +0.3 74,258 - RR42_RS00240 0.67 -0.0 74,659 + +0.2 74,660 - -0.1 74,660 - -0.7 74,850 - RR42_RS00245 0.15 +0.2
Or see this region's nucleotide sequence