Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04560

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04555 and MMJJ_RS04560 are separated by 9 nucleotidesMMJJ_RS04560 and MMJJ_RS04565 are separated by 90 nucleotidesMMJJ_RS04565 and MMJJ_RS04570 are separated by 46 nucleotides MMJJ_RS04555: MMJJ_RS04555 - MATE family efflux transporter, at 849,791 to 851,173 _RS04555 MMJJ_RS04560: MMJJ_RS04560 - ABC transporter permease, at 851,183 to 851,944 _RS04560 MMJJ_RS04565: MMJJ_RS04565 - sirohydrochlorin nickelochelatase, at 852,035 to 852,472 _RS04565 MMJJ_RS04570: MMJJ_RS04570 - TRC40/GET3/ArsA family transport-energizing ATPase, at 852,519 to 853,556 _RS04570 Position (kb) 851 852Strain fitness (log2 ratio) -2 -1 0 1 2at 850.183 kb on - strand, within MMJJ_RS04555at 850.184 kb on + strand, within MMJJ_RS04555at 850.197 kb on + strand, within MMJJ_RS04555at 850.292 kb on - strand, within MMJJ_RS04555at 850.293 kb on + strand, within MMJJ_RS04555at 850.293 kb on + strand, within MMJJ_RS04555at 850.344 kb on - strand, within MMJJ_RS04555at 850.344 kb on - strand, within MMJJ_RS04555at 850.344 kb on - strand, within MMJJ_RS04555at 850.345 kb on + strand, within MMJJ_RS04555at 850.346 kb on - strand, within MMJJ_RS04555at 850.346 kb on - strand, within MMJJ_RS04555at 850.346 kb on - strand, within MMJJ_RS04555at 850.346 kb on - strand, within MMJJ_RS04555at 850.347 kb on + strand, within MMJJ_RS04555at 850.347 kb on + strand, within MMJJ_RS04555at 850.347 kb on + strand, within MMJJ_RS04555at 850.347 kb on + strand, within MMJJ_RS04555at 850.347 kb on + strand, within MMJJ_RS04555at 850.350 kb on - strand, within MMJJ_RS04555at 850.351 kb on + strand, within MMJJ_RS04555at 850.351 kb on + strand, within MMJJ_RS04555at 850.351 kb on + strand, within MMJJ_RS04555at 850.358 kb on + strand, within MMJJ_RS04555at 850.390 kb on + strand, within MMJJ_RS04555at 850.436 kb on + strand, within MMJJ_RS04555at 850.489 kb on - strand, within MMJJ_RS04555at 850.498 kb on + strand, within MMJJ_RS04555at 850.566 kb on - strand, within MMJJ_RS04555at 850.638 kb on - strand, within MMJJ_RS04555at 850.638 kb on - strand, within MMJJ_RS04555at 850.638 kb on - strand, within MMJJ_RS04555at 850.639 kb on + strand, within MMJJ_RS04555at 850.639 kb on + strand, within MMJJ_RS04555at 850.643 kb on + strand, within MMJJ_RS04555at 850.745 kb on - strand, within MMJJ_RS04555at 850.780 kb on + strand, within MMJJ_RS04555at 850.816 kb on - strand, within MMJJ_RS04555at 850.817 kb on + strand, within MMJJ_RS04555at 850.817 kb on + strand, within MMJJ_RS04555at 850.817 kb on + strand, within MMJJ_RS04555at 850.820 kb on - strand, within MMJJ_RS04555at 850.820 kb on - strand, within MMJJ_RS04555at 850.825 kb on + strand, within MMJJ_RS04555at 850.828 kb on - strand, within MMJJ_RS04555at 850.828 kb on - strand, within MMJJ_RS04555at 850.829 kb on + strand, within MMJJ_RS04555at 850.833 kb on + strand, within MMJJ_RS04555at 850.853 kb on + strand, within MMJJ_RS04555at 850.872 kb on - strand, within MMJJ_RS04555at 850.883 kb on - strand, within MMJJ_RS04555at 850.883 kb on - strand, within MMJJ_RS04555at 850.883 kb on - strand, within MMJJ_RS04555at 850.884 kb on + strand, within MMJJ_RS04555at 850.884 kb on + strand, within MMJJ_RS04555at 850.884 kb on + strand, within MMJJ_RS04555at 850.884 kb on + strand, within MMJJ_RS04555at 850.884 kb on + strand, within MMJJ_RS04555at 850.884 kb on + strand, within MMJJ_RS04555at 850.884 kb on + strand, within MMJJ_RS04555at 850.884 kb on + strand, within MMJJ_RS04555at 850.885 kb on - strand, within MMJJ_RS04555at 850.885 kb on - strand, within MMJJ_RS04555at 850.885 kb on - strand, within MMJJ_RS04555at 850.885 kb on - strand, within MMJJ_RS04555at 850.885 kb on - strand, within MMJJ_RS04555at 850.885 kb on - strand, within MMJJ_RS04555at 850.886 kb on + strand, within MMJJ_RS04555at 850.886 kb on + strand, within MMJJ_RS04555at 850.886 kb on + strand, within MMJJ_RS04555at 850.886 kb on + strand, within MMJJ_RS04555at 850.893 kb on - strand, within MMJJ_RS04555at 850.894 kb on + strand, within MMJJ_RS04555at 850.972 kb on - strand, within MMJJ_RS04555at 850.972 kb on - strand, within MMJJ_RS04555at 850.973 kb on + strand, within MMJJ_RS04555at 850.980 kb on - strand, within MMJJ_RS04555at 850.983 kb on - strand, within MMJJ_RS04555at 850.983 kb on - strand, within MMJJ_RS04555at 851.004 kb on - strand, within MMJJ_RS04555at 851.015 kb on - strand, within MMJJ_RS04555at 851.015 kb on - strand, within MMJJ_RS04555at 851.016 kb on + strand, within MMJJ_RS04555at 851.017 kb on - strand, within MMJJ_RS04555at 851.018 kb on + strand, within MMJJ_RS04555at 851.018 kb on + strand, within MMJJ_RS04555at 851.018 kb on + strand, within MMJJ_RS04555at 851.018 kb on + strand, within MMJJ_RS04555at 851.018 kb on + strand, within MMJJ_RS04555at 851.031 kb on - strand, within MMJJ_RS04555at 851.035 kb on - strandat 851.095 kb on - strandat 851.107 kb on + strandat 851.107 kb on + strandat 851.117 kb on - strandat 851.117 kb on - strandat 851.140 kb on - strandat 851.141 kb on + strandat 851.146 kb on + strandat 851.146 kb on + strandat 851.168 kb on + strandat 851.183 kb on + strandat 851.218 kb on - strandat 851.219 kb on + strandat 851.219 kb on + strandat 851.227 kb on - strandat 851.247 kb on - strandat 851.247 kb on - strandat 851.247 kb on - strandat 851.247 kb on - strandat 851.248 kb on + strandat 851.248 kb on + strandat 851.259 kb on - strandat 851.262 kb on - strand, within MMJJ_RS04560at 851.263 kb on + strand, within MMJJ_RS04560at 851.337 kb on - strand, within MMJJ_RS04560at 851.338 kb on + strand, within MMJJ_RS04560at 851.338 kb on + strand, within MMJJ_RS04560at 851.363 kb on - strand, within MMJJ_RS04560at 851.363 kb on - strand, within MMJJ_RS04560at 851.364 kb on + strand, within MMJJ_RS04560at 851.364 kb on + strand, within MMJJ_RS04560at 851.367 kb on - strand, within MMJJ_RS04560at 851.367 kb on - strand, within MMJJ_RS04560at 851.368 kb on + strand, within MMJJ_RS04560at 851.368 kb on + strand, within MMJJ_RS04560at 851.395 kb on + strand, within MMJJ_RS04560at 851.395 kb on + strand, within MMJJ_RS04560at 851.429 kb on + strand, within MMJJ_RS04560at 851.575 kb on + strand, within MMJJ_RS04560at 851.698 kb on + strand, within MMJJ_RS04560at 851.724 kb on - strand, within MMJJ_RS04560at 851.751 kb on - strand, within MMJJ_RS04560at 851.751 kb on - strand, within MMJJ_RS04560at 851.787 kb on + strand, within MMJJ_RS04560at 851.790 kb on - strand, within MMJJ_RS04560at 851.790 kb on - strand, within MMJJ_RS04560at 851.791 kb on + strand, within MMJJ_RS04560at 851.791 kb on + strand, within MMJJ_RS04560at 851.791 kb on + strand, within MMJJ_RS04560at 851.791 kb on + strand, within MMJJ_RS04560at 851.804 kb on - strand, within MMJJ_RS04560at 851.804 kb on - strand, within MMJJ_RS04560at 851.805 kb on + strand, within MMJJ_RS04560at 851.805 kb on + strand, within MMJJ_RS04560at 851.805 kb on + strand, within MMJJ_RS04560at 851.805 kb on + strand, within MMJJ_RS04560at 851.825 kb on - strand, within MMJJ_RS04560at 851.857 kb on + strand, within MMJJ_RS04560at 851.902 kb on + strandat 851.916 kb on + strandat 851.916 kb on + strandat 851.916 kb on + strandat 851.965 kb on - strandat 851.966 kb on + strandat 851.966 kb on + strandat 851.966 kb on + strandat 851.969 kb on - strandat 851.970 kb on + strandat 852.094 kb on - strand, within MMJJ_RS04565at 852.128 kb on + strand, within MMJJ_RS04565at 852.141 kb on - strand, within MMJJ_RS04565at 852.152 kb on + strand, within MMJJ_RS04565at 852.198 kb on - strand, within MMJJ_RS04565at 852.222 kb on - strand, within MMJJ_RS04565at 852.229 kb on + strand, within MMJJ_RS04565at 852.400 kb on + strandat 852.437 kb on + strandat 852.444 kb on - strandat 852.445 kb on + strandat 852.445 kb on + strandat 852.470 kb on - strandat 852.476 kb on + strandat 852.517 kb on + strandat 852.520 kb on - strandat 852.521 kb on + strandat 852.521 kb on + strandat 852.525 kb on - strandat 852.526 kb on + strandat 852.532 kb on + strandat 852.532 kb on + strandat 852.532 kb on + strandat 852.532 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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850,183 - MMJJ_RS04555 0.28 +0.4
850,184 + MMJJ_RS04555 0.28 -0.4
850,197 + MMJJ_RS04555 0.29 +0.3
850,292 - MMJJ_RS04555 0.36 -0.0
850,293 + MMJJ_RS04555 0.36 +0.1
850,293 + MMJJ_RS04555 0.36 -0.5
850,344 - MMJJ_RS04555 0.40 +0.1
850,344 - MMJJ_RS04555 0.40 +1.2
850,344 - MMJJ_RS04555 0.40 +0.3
850,345 + MMJJ_RS04555 0.40 -0.4
850,346 - MMJJ_RS04555 0.40 +0.0
850,346 - MMJJ_RS04555 0.40 -0.5
850,346 - MMJJ_RS04555 0.40 +0.2
850,346 - MMJJ_RS04555 0.40 -0.4
850,347 + MMJJ_RS04555 0.40 -0.2
850,347 + MMJJ_RS04555 0.40 -0.4
850,347 + MMJJ_RS04555 0.40 +1.9
850,347 + MMJJ_RS04555 0.40 -0.4
850,347 + MMJJ_RS04555 0.40 -0.5
850,350 - MMJJ_RS04555 0.40 +0.4
850,351 + MMJJ_RS04555 0.40 -0.2
850,351 + MMJJ_RS04555 0.40 +0.2
850,351 + MMJJ_RS04555 0.40 -0.6
850,358 + MMJJ_RS04555 0.41 +0.0
850,390 + MMJJ_RS04555 0.43 -0.8
850,436 + MMJJ_RS04555 0.47 +0.0
850,489 - MMJJ_RS04555 0.50 -0.3
850,498 + MMJJ_RS04555 0.51 +0.5
850,566 - MMJJ_RS04555 0.56 -0.2
850,638 - MMJJ_RS04555 0.61 +0.3
850,638 - MMJJ_RS04555 0.61 +0.5
850,638 - MMJJ_RS04555 0.61 +0.2
850,639 + MMJJ_RS04555 0.61 +0.2
850,639 + MMJJ_RS04555 0.61 -0.3
850,643 + MMJJ_RS04555 0.62 +1.4
850,745 - MMJJ_RS04555 0.69 -0.1
850,780 + MMJJ_RS04555 0.72 -0.4
850,816 - MMJJ_RS04555 0.74 +0.3
850,817 + MMJJ_RS04555 0.74 -0.5
850,817 + MMJJ_RS04555 0.74 +0.1
850,817 + MMJJ_RS04555 0.74 -0.6
850,820 - MMJJ_RS04555 0.74 -0.8
850,820 - MMJJ_RS04555 0.74 +0.1
850,825 + MMJJ_RS04555 0.75 +0.3
850,828 - MMJJ_RS04555 0.75 +0.7
850,828 - MMJJ_RS04555 0.75 -0.2
850,829 + MMJJ_RS04555 0.75 -0.4
850,833 + MMJJ_RS04555 0.75 +0.2
850,853 + MMJJ_RS04555 0.77 +0.1
850,872 - MMJJ_RS04555 0.78 -0.3
850,883 - MMJJ_RS04555 0.79 -0.3
850,883 - MMJJ_RS04555 0.79 -0.3
850,883 - MMJJ_RS04555 0.79 -0.5
850,884 + MMJJ_RS04555 0.79 -0.2
850,884 + MMJJ_RS04555 0.79 -0.1
850,884 + MMJJ_RS04555 0.79 -0.3
850,884 + MMJJ_RS04555 0.79 -0.2
850,884 + MMJJ_RS04555 0.79 -0.5
850,884 + MMJJ_RS04555 0.79 -0.3
850,884 + MMJJ_RS04555 0.79 +0.3
850,884 + MMJJ_RS04555 0.79 +0.2
850,885 - MMJJ_RS04555 0.79 -0.1
850,885 - MMJJ_RS04555 0.79 +0.3
850,885 - MMJJ_RS04555 0.79 -0.4
850,885 - MMJJ_RS04555 0.79 -0.6
850,885 - MMJJ_RS04555 0.79 -0.5
850,885 - MMJJ_RS04555 0.79 +0.5
850,886 + MMJJ_RS04555 0.79 -0.2
850,886 + MMJJ_RS04555 0.79 +0.1
850,886 + MMJJ_RS04555 0.79 -0.8
850,886 + MMJJ_RS04555 0.79 -0.4
850,893 - MMJJ_RS04555 0.80 -0.4
850,894 + MMJJ_RS04555 0.80 +0.6
850,972 - MMJJ_RS04555 0.85 -0.1
850,972 - MMJJ_RS04555 0.85 +0.3
850,973 + MMJJ_RS04555 0.85 -0.1
850,980 - MMJJ_RS04555 0.86 +0.6
850,983 - MMJJ_RS04555 0.86 -0.2
850,983 - MMJJ_RS04555 0.86 -0.2
851,004 - MMJJ_RS04555 0.88 -0.7
851,015 - MMJJ_RS04555 0.89 -0.3
851,015 - MMJJ_RS04555 0.89 -0.3
851,016 + MMJJ_RS04555 0.89 +1.3
851,017 - MMJJ_RS04555 0.89 -0.2
851,018 + MMJJ_RS04555 0.89 -0.1
851,018 + MMJJ_RS04555 0.89 -0.5
851,018 + MMJJ_RS04555 0.89 +0.7
851,018 + MMJJ_RS04555 0.89 +0.1
851,018 + MMJJ_RS04555 0.89 +0.5
851,031 - MMJJ_RS04555 0.90 -0.5
851,035 - +0.9
851,095 - +0.3
851,107 + -0.4
851,107 + +0.4
851,117 - -0.6
851,117 - +0.0
851,140 - -0.2
851,141 + -0.1
851,146 + +1.1
851,146 + +1.4
851,168 + +1.7
851,183 + +0.7
851,218 - +0.4
851,219 + +0.0
851,219 + -0.4
851,227 - -0.2
851,247 - +0.5
851,247 - -0.8
851,247 - -0.2
851,247 - -0.1
851,248 + -0.4
851,248 + +0.4
851,259 - -0.3
851,262 - MMJJ_RS04560 0.10 +1.1
851,263 + MMJJ_RS04560 0.10 +0.4
851,337 - MMJJ_RS04560 0.20 +0.0
851,338 + MMJJ_RS04560 0.20 +0.0
851,338 + MMJJ_RS04560 0.20 +0.7
851,363 - MMJJ_RS04560 0.24 -0.4
851,363 - MMJJ_RS04560 0.24 +0.3
851,364 + MMJJ_RS04560 0.24 -0.0
851,364 + MMJJ_RS04560 0.24 +0.2
851,367 - MMJJ_RS04560 0.24 -0.1
851,367 - MMJJ_RS04560 0.24 -0.1
851,368 + MMJJ_RS04560 0.24 -0.4
851,368 + MMJJ_RS04560 0.24 +0.2
851,395 + MMJJ_RS04560 0.28 -0.4
851,395 + MMJJ_RS04560 0.28 -2.4
851,429 + MMJJ_RS04560 0.32 -0.3
851,575 + MMJJ_RS04560 0.51 -0.2
851,698 + MMJJ_RS04560 0.68 -0.2
851,724 - MMJJ_RS04560 0.71 +0.0
851,751 - MMJJ_RS04560 0.75 +0.5
851,751 - MMJJ_RS04560 0.75 -0.9
851,787 + MMJJ_RS04560 0.79 -0.3
851,790 - MMJJ_RS04560 0.80 -0.2
851,790 - MMJJ_RS04560 0.80 -0.8
851,791 + MMJJ_RS04560 0.80 +0.2
851,791 + MMJJ_RS04560 0.80 -0.0
851,791 + MMJJ_RS04560 0.80 -1.0
851,791 + MMJJ_RS04560 0.80 -0.2
851,804 - MMJJ_RS04560 0.81 -0.4
851,804 - MMJJ_RS04560 0.81 -0.2
851,805 + MMJJ_RS04560 0.82 -0.6
851,805 + MMJJ_RS04560 0.82 -0.1
851,805 + MMJJ_RS04560 0.82 -1.0
851,805 + MMJJ_RS04560 0.82 +0.2
851,825 - MMJJ_RS04560 0.84 -0.2
851,857 + MMJJ_RS04560 0.88 -0.3
851,902 + -0.3
851,916 + +0.2
851,916 + +0.5
851,916 + -0.6
851,965 - +1.1
851,966 + +0.5
851,966 + -0.4
851,966 + +1.2
851,969 - +0.3
851,970 + +0.4
852,094 - MMJJ_RS04565 0.13 +0.6
852,128 + MMJJ_RS04565 0.21 -1.0
852,141 - MMJJ_RS04565 0.24 -0.3
852,152 + MMJJ_RS04565 0.27 -0.0
852,198 - MMJJ_RS04565 0.37 -0.4
852,222 - MMJJ_RS04565 0.43 -0.2
852,229 + MMJJ_RS04565 0.44 +2.1
852,400 + +1.2
852,437 + +0.4
852,444 - +0.5
852,445 + +1.5
852,445 + +1.5
852,470 - -0.1
852,476 + -0.3
852,517 + +0.0
852,520 - -0.5
852,521 + +0.0
852,521 + -2.2
852,525 - +0.4
852,526 + +0.1
852,532 + +0.1
852,532 + +1.9
852,532 + -0.0
852,532 + -0.5

Or see this region's nucleotide sequence