Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04210

Experiment: Collected from freezer stock

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS04205 and MMJJ_RS04210 are separated by 1 nucleotidesMMJJ_RS04210 and MMJJ_RS04215 are separated by 94 nucleotides MMJJ_RS04205: MMJJ_RS04205 - glycine--tRNA ligase, at 782,166 to 783,890 _RS04205 MMJJ_RS04210: MMJJ_RS04210 - DUF434 domain-containing protein, at 783,892 to 784,560 _RS04210 MMJJ_RS04215: MMJJ_RS04215 - DMT family transporter, at 784,655 to 785,554 _RS04215 Position (kb) 783 784 785Strain fitness (log2 ratio) -1 0 1at 782.998 kb on + strandat 783.876 kb on + strandat 783.943 kb on - strandat 783.943 kb on - strandat 783.944 kb on + strandat 783.976 kb on + strand, within MMJJ_RS04210at 784.041 kb on - strand, within MMJJ_RS04210at 784.072 kb on + strand, within MMJJ_RS04210at 784.072 kb on + strand, within MMJJ_RS04210at 784.137 kb on - strand, within MMJJ_RS04210at 784.158 kb on + strand, within MMJJ_RS04210at 784.159 kb on - strand, within MMJJ_RS04210at 784.160 kb on + strand, within MMJJ_RS04210at 784.258 kb on - strand, within MMJJ_RS04210at 784.270 kb on - strand, within MMJJ_RS04210at 784.270 kb on - strand, within MMJJ_RS04210at 784.270 kb on - strand, within MMJJ_RS04210at 784.324 kb on - strand, within MMJJ_RS04210at 784.375 kb on - strand, within MMJJ_RS04210at 784.455 kb on - strand, within MMJJ_RS04210at 784.459 kb on - strand, within MMJJ_RS04210at 784.477 kb on + strand, within MMJJ_RS04210at 784.523 kb on - strandat 784.572 kb on - strandat 784.580 kb on + strandat 784.591 kb on - strandat 784.654 kb on + strandat 784.656 kb on - strandat 784.682 kb on + strandat 784.684 kb on + strandat 784.686 kb on + strandat 784.703 kb on - strandat 784.762 kb on - strand, within MMJJ_RS04215at 784.772 kb on - strand, within MMJJ_RS04215at 784.804 kb on - strand, within MMJJ_RS04215at 784.841 kb on - strand, within MMJJ_RS04215at 784.875 kb on - strand, within MMJJ_RS04215at 784.875 kb on - strand, within MMJJ_RS04215at 784.878 kb on + strand, within MMJJ_RS04215at 784.922 kb on - strand, within MMJJ_RS04215at 784.942 kb on - strand, within MMJJ_RS04215at 784.942 kb on - strand, within MMJJ_RS04215at 784.943 kb on + strand, within MMJJ_RS04215at 784.943 kb on + strand, within MMJJ_RS04215at 784.943 kb on + strand, within MMJJ_RS04215at 784.944 kb on - strand, within MMJJ_RS04215at 784.944 kb on - strand, within MMJJ_RS04215at 784.944 kb on - strand, within MMJJ_RS04215at 784.944 kb on - strand, within MMJJ_RS04215at 784.945 kb on + strand, within MMJJ_RS04215at 784.945 kb on + strand, within MMJJ_RS04215at 784.945 kb on + strand, within MMJJ_RS04215at 784.958 kb on - strand, within MMJJ_RS04215at 784.972 kb on - strand, within MMJJ_RS04215at 784.973 kb on + strand, within MMJJ_RS04215at 784.980 kb on - strand, within MMJJ_RS04215at 784.981 kb on + strand, within MMJJ_RS04215at 784.981 kb on + strand, within MMJJ_RS04215at 784.988 kb on - strand, within MMJJ_RS04215at 784.988 kb on - strand, within MMJJ_RS04215at 785.030 kb on - strand, within MMJJ_RS04215at 785.030 kb on - strand, within MMJJ_RS04215at 785.031 kb on + strand, within MMJJ_RS04215at 785.037 kb on - strand, within MMJJ_RS04215at 785.037 kb on - strand, within MMJJ_RS04215at 785.037 kb on - strand, within MMJJ_RS04215at 785.038 kb on + strand, within MMJJ_RS04215at 785.038 kb on + strand, within MMJJ_RS04215at 785.038 kb on + strand, within MMJJ_RS04215at 785.038 kb on + strand, within MMJJ_RS04215at 785.039 kb on - strand, within MMJJ_RS04215at 785.040 kb on + strand, within MMJJ_RS04215at 785.051 kb on - strand, within MMJJ_RS04215at 785.052 kb on + strand, within MMJJ_RS04215at 785.069 kb on - strand, within MMJJ_RS04215at 785.069 kb on - strand, within MMJJ_RS04215at 785.070 kb on + strand, within MMJJ_RS04215at 785.071 kb on - strand, within MMJJ_RS04215at 785.071 kb on - strand, within MMJJ_RS04215at 785.071 kb on - strand, within MMJJ_RS04215at 785.071 kb on - strand, within MMJJ_RS04215at 785.072 kb on + strand, within MMJJ_RS04215at 785.072 kb on + strand, within MMJJ_RS04215at 785.072 kb on + strand, within MMJJ_RS04215at 785.072 kb on + strand, within MMJJ_RS04215at 785.086 kb on - strand, within MMJJ_RS04215at 785.125 kb on - strand, within MMJJ_RS04215at 785.125 kb on - strand, within MMJJ_RS04215at 785.131 kb on - strand, within MMJJ_RS04215at 785.132 kb on + strand, within MMJJ_RS04215at 785.135 kb on - strand, within MMJJ_RS04215at 785.135 kb on - strand, within MMJJ_RS04215at 785.155 kb on - strand, within MMJJ_RS04215at 785.159 kb on - strand, within MMJJ_RS04215at 785.269 kb on - strand, within MMJJ_RS04215at 785.269 kb on - strand, within MMJJ_RS04215at 785.269 kb on - strand, within MMJJ_RS04215at 785.269 kb on - strand, within MMJJ_RS04215at 785.269 kb on - strand, within MMJJ_RS04215at 785.319 kb on + strand, within MMJJ_RS04215at 785.339 kb on + strand, within MMJJ_RS04215at 785.340 kb on - strand, within MMJJ_RS04215at 785.340 kb on - strand, within MMJJ_RS04215at 785.371 kb on - strand, within MMJJ_RS04215at 785.372 kb on + strand, within MMJJ_RS04215at 785.397 kb on + strand, within MMJJ_RS04215at 785.400 kb on + strand, within MMJJ_RS04215at 785.526 kb on + strandat 785.526 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
remove
782,998 + +1.7
783,876 + -0.5
783,943 - +1.4
783,943 - +0.3
783,944 + -0.0
783,976 + MMJJ_RS04210 0.13 -0.4
784,041 - MMJJ_RS04210 0.22 +0.4
784,072 + MMJJ_RS04210 0.27 +0.2
784,072 + MMJJ_RS04210 0.27 -0.3
784,137 - MMJJ_RS04210 0.37 +0.0
784,158 + MMJJ_RS04210 0.40 -0.2
784,159 - MMJJ_RS04210 0.40 +0.2
784,160 + MMJJ_RS04210 0.40 +0.1
784,258 - MMJJ_RS04210 0.55 -0.1
784,270 - MMJJ_RS04210 0.57 -0.1
784,270 - MMJJ_RS04210 0.57 +0.5
784,270 - MMJJ_RS04210 0.57 -0.1
784,324 - MMJJ_RS04210 0.65 -0.7
784,375 - MMJJ_RS04210 0.72 -0.4
784,455 - MMJJ_RS04210 0.84 +0.5
784,459 - MMJJ_RS04210 0.85 -0.5
784,477 + MMJJ_RS04210 0.87 -0.7
784,523 - -0.4
784,572 - +0.2
784,580 + -0.5
784,591 - -0.1
784,654 + +0.9
784,656 - +0.4
784,682 + -0.4
784,684 + +0.3
784,686 + -0.2
784,703 - +0.2
784,762 - MMJJ_RS04215 0.12 +0.4
784,772 - MMJJ_RS04215 0.13 -0.2
784,804 - MMJJ_RS04215 0.17 +1.4
784,841 - MMJJ_RS04215 0.21 -0.2
784,875 - MMJJ_RS04215 0.24 -0.5
784,875 - MMJJ_RS04215 0.24 -0.4
784,878 + MMJJ_RS04215 0.25 +1.4
784,922 - MMJJ_RS04215 0.30 -0.2
784,942 - MMJJ_RS04215 0.32 -0.9
784,942 - MMJJ_RS04215 0.32 +0.1
784,943 + MMJJ_RS04215 0.32 +0.2
784,943 + MMJJ_RS04215 0.32 -0.0
784,943 + MMJJ_RS04215 0.32 -0.6
784,944 - MMJJ_RS04215 0.32 -0.0
784,944 - MMJJ_RS04215 0.32 +1.0
784,944 - MMJJ_RS04215 0.32 -0.3
784,944 - MMJJ_RS04215 0.32 -0.0
784,945 + MMJJ_RS04215 0.32 -0.2
784,945 + MMJJ_RS04215 0.32 +1.0
784,945 + MMJJ_RS04215 0.32 -0.5
784,958 - MMJJ_RS04215 0.34 -0.0
784,972 - MMJJ_RS04215 0.35 -0.4
784,973 + MMJJ_RS04215 0.35 -0.5
784,980 - MMJJ_RS04215 0.36 +0.4
784,981 + MMJJ_RS04215 0.36 +0.0
784,981 + MMJJ_RS04215 0.36 -0.9
784,988 - MMJJ_RS04215 0.37 -0.1
784,988 - MMJJ_RS04215 0.37 -0.8
785,030 - MMJJ_RS04215 0.42 -0.4
785,030 - MMJJ_RS04215 0.42 -0.7
785,031 + MMJJ_RS04215 0.42 +0.3
785,037 - MMJJ_RS04215 0.42 +0.5
785,037 - MMJJ_RS04215 0.42 -0.1
785,037 - MMJJ_RS04215 0.42 +0.0
785,038 + MMJJ_RS04215 0.43 +0.9
785,038 + MMJJ_RS04215 0.43 -0.2
785,038 + MMJJ_RS04215 0.43 -0.2
785,038 + MMJJ_RS04215 0.43 -0.3
785,039 - MMJJ_RS04215 0.43 -0.3
785,040 + MMJJ_RS04215 0.43 +1.7
785,051 - MMJJ_RS04215 0.44 -0.1
785,052 + MMJJ_RS04215 0.44 -0.4
785,069 - MMJJ_RS04215 0.46 -0.6
785,069 - MMJJ_RS04215 0.46 -0.8
785,070 + MMJJ_RS04215 0.46 +0.2
785,071 - MMJJ_RS04215 0.46 -0.0
785,071 - MMJJ_RS04215 0.46 +0.1
785,071 - MMJJ_RS04215 0.46 -0.1
785,071 - MMJJ_RS04215 0.46 -0.0
785,072 + MMJJ_RS04215 0.46 -0.3
785,072 + MMJJ_RS04215 0.46 -0.4
785,072 + MMJJ_RS04215 0.46 +0.7
785,072 + MMJJ_RS04215 0.46 +0.3
785,086 - MMJJ_RS04215 0.48 -0.2
785,125 - MMJJ_RS04215 0.52 +0.1
785,125 - MMJJ_RS04215 0.52 -0.8
785,131 - MMJJ_RS04215 0.53 +0.1
785,132 + MMJJ_RS04215 0.53 -0.2
785,135 - MMJJ_RS04215 0.53 +1.3
785,135 - MMJJ_RS04215 0.53 -0.7
785,155 - MMJJ_RS04215 0.56 -0.4
785,159 - MMJJ_RS04215 0.56 -0.5
785,269 - MMJJ_RS04215 0.68 -0.2
785,269 - MMJJ_RS04215 0.68 -0.3
785,269 - MMJJ_RS04215 0.68 -0.6
785,269 - MMJJ_RS04215 0.68 -0.2
785,269 - MMJJ_RS04215 0.68 +0.3
785,319 + MMJJ_RS04215 0.74 +0.7
785,339 + MMJJ_RS04215 0.76 -0.2
785,340 - MMJJ_RS04215 0.76 +0.6
785,340 - MMJJ_RS04215 0.76 -0.4
785,371 - MMJJ_RS04215 0.80 -0.3
785,372 + MMJJ_RS04215 0.80 -0.4
785,397 + MMJJ_RS04215 0.82 +0.4
785,400 + MMJJ_RS04215 0.83 -0.1
785,526 + -0.4
785,526 + -0.6

Or see this region's nucleotide sequence