Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03335

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03325 and MMJJ_RS03330 are separated by 12 nucleotidesMMJJ_RS03330 and MMJJ_RS03335 are separated by 11 nucleotidesMMJJ_RS03335 and MMJJ_RS03340 are separated by 73 nucleotidesMMJJ_RS03340 and MMJJ_RS03345 are separated by 9 nucleotidesMMJJ_RS03345 and MMJJ_RS03350 overlap by 4 nucleotides MMJJ_RS03325: MMJJ_RS03325 - hypothetical protein, at 632,024 to 634,282 _RS03325 MMJJ_RS03330: MMJJ_RS03330 - hypothetical protein, at 634,295 to 634,879 _RS03330 MMJJ_RS03335: MMJJ_RS03335 - hypothetical protein, at 634,891 to 635,184 _RS03335 MMJJ_RS03340: MMJJ_RS03340 - hypothetical protein, at 635,258 to 635,644 _RS03340 MMJJ_RS03345: MMJJ_RS03345 - hypothetical protein, at 635,654 to 635,863 _RS03345 MMJJ_RS03350: MMJJ_RS03350 - hypothetical protein, at 635,860 to 636,087 _RS03350 Position (kb) 634 635 636Strain fitness (log2 ratio) -1 0 1 2 3at 633.895 kb on + strand, within MMJJ_RS03325at 633.895 kb on + strand, within MMJJ_RS03325at 633.895 kb on + strand, within MMJJ_RS03325at 633.895 kb on + strand, within MMJJ_RS03325at 633.898 kb on - strand, within MMJJ_RS03325at 633.898 kb on - strand, within MMJJ_RS03325at 633.898 kb on - strand, within MMJJ_RS03325at 633.898 kb on - strand, within MMJJ_RS03325at 633.899 kb on + strand, within MMJJ_RS03325at 633.899 kb on + strand, within MMJJ_RS03325at 633.899 kb on + strand, within MMJJ_RS03325at 633.918 kb on - strand, within MMJJ_RS03325at 633.919 kb on + strand, within MMJJ_RS03325at 633.936 kb on + strand, within MMJJ_RS03325at 633.957 kb on + strand, within MMJJ_RS03325at 633.970 kb on - strand, within MMJJ_RS03325at 633.970 kb on - strand, within MMJJ_RS03325at 633.971 kb on + strand, within MMJJ_RS03325at 633.971 kb on + strand, within MMJJ_RS03325at 633.972 kb on - strand, within MMJJ_RS03325at 633.974 kb on - strand, within MMJJ_RS03325at 633.974 kb on - strand, within MMJJ_RS03325at 634.006 kb on - strand, within MMJJ_RS03325at 634.156 kb on - strandat 634.176 kb on - strandat 634.176 kb on - strandat 634.303 kb on - strandat 634.307 kb on - strandat 634.307 kb on - strandat 634.340 kb on - strandat 634.340 kb on - strandat 634.341 kb on + strandat 634.341 kb on + strandat 634.365 kb on - strand, within MMJJ_RS03330at 634.365 kb on - strand, within MMJJ_RS03330at 634.366 kb on + strand, within MMJJ_RS03330at 634.369 kb on - strand, within MMJJ_RS03330at 634.370 kb on + strand, within MMJJ_RS03330at 634.427 kb on + strand, within MMJJ_RS03330at 634.474 kb on - strand, within MMJJ_RS03330at 634.481 kb on - strand, within MMJJ_RS03330at 634.498 kb on - strand, within MMJJ_RS03330at 634.498 kb on - strand, within MMJJ_RS03330at 634.499 kb on + strand, within MMJJ_RS03330at 634.502 kb on + strand, within MMJJ_RS03330at 634.502 kb on + strand, within MMJJ_RS03330at 634.502 kb on + strand, within MMJJ_RS03330at 634.519 kb on - strand, within MMJJ_RS03330at 634.546 kb on - strand, within MMJJ_RS03330at 634.555 kb on - strand, within MMJJ_RS03330at 634.556 kb on + strand, within MMJJ_RS03330at 634.618 kb on - strand, within MMJJ_RS03330at 634.618 kb on - strand, within MMJJ_RS03330at 634.619 kb on + strand, within MMJJ_RS03330at 634.623 kb on + strand, within MMJJ_RS03330at 634.623 kb on + strand, within MMJJ_RS03330at 634.661 kb on + strand, within MMJJ_RS03330at 634.661 kb on + strand, within MMJJ_RS03330at 634.718 kb on - strand, within MMJJ_RS03330at 634.719 kb on + strand, within MMJJ_RS03330at 634.719 kb on + strand, within MMJJ_RS03330at 634.727 kb on + strand, within MMJJ_RS03330at 634.727 kb on + strand, within MMJJ_RS03330at 634.769 kb on - strand, within MMJJ_RS03330at 634.770 kb on + strand, within MMJJ_RS03330at 634.770 kb on + strand, within MMJJ_RS03330at 634.779 kb on + strand, within MMJJ_RS03330at 634.779 kb on + strand, within MMJJ_RS03330at 634.779 kb on + strand, within MMJJ_RS03330at 634.811 kb on - strand, within MMJJ_RS03330at 634.812 kb on + strand, within MMJJ_RS03330at 634.821 kb on + strandat 634.872 kb on + strandat 634.880 kb on + strandat 634.882 kb on + strandat 634.907 kb on + strandat 634.909 kb on - strandat 634.970 kb on - strand, within MMJJ_RS03335at 635.057 kb on - strand, within MMJJ_RS03335at 635.058 kb on + strand, within MMJJ_RS03335at 635.058 kb on + strand, within MMJJ_RS03335at 635.104 kb on - strand, within MMJJ_RS03335at 635.121 kb on - strand, within MMJJ_RS03335at 635.121 kb on - strand, within MMJJ_RS03335at 635.121 kb on - strand, within MMJJ_RS03335at 635.121 kb on - strand, within MMJJ_RS03335at 635.121 kb on - strand, within MMJJ_RS03335at 635.122 kb on + strand, within MMJJ_RS03335at 635.122 kb on + strand, within MMJJ_RS03335at 635.122 kb on + strand, within MMJJ_RS03335at 635.123 kb on - strand, within MMJJ_RS03335at 635.123 kb on - strand, within MMJJ_RS03335at 635.124 kb on + strand, within MMJJ_RS03335at 635.124 kb on + strand, within MMJJ_RS03335at 635.124 kb on + strand, within MMJJ_RS03335at 635.153 kb on + strand, within MMJJ_RS03335at 635.185 kb on + strandat 635.185 kb on + strandat 635.234 kb on + strandat 635.234 kb on + strandat 635.234 kb on + strandat 635.235 kb on - strandat 635.257 kb on + strandat 635.304 kb on - strand, within MMJJ_RS03340at 635.304 kb on - strand, within MMJJ_RS03340at 635.305 kb on + strand, within MMJJ_RS03340at 635.305 kb on + strand, within MMJJ_RS03340at 635.306 kb on - strand, within MMJJ_RS03340at 635.307 kb on + strand, within MMJJ_RS03340at 635.307 kb on + strand, within MMJJ_RS03340at 635.330 kb on - strand, within MMJJ_RS03340at 635.372 kb on - strand, within MMJJ_RS03340at 635.373 kb on + strand, within MMJJ_RS03340at 635.373 kb on + strand, within MMJJ_RS03340at 635.396 kb on - strand, within MMJJ_RS03340at 635.397 kb on + strand, within MMJJ_RS03340at 635.397 kb on + strand, within MMJJ_RS03340at 635.408 kb on + strand, within MMJJ_RS03340at 635.497 kb on + strand, within MMJJ_RS03340at 635.587 kb on + strand, within MMJJ_RS03340at 635.595 kb on + strand, within MMJJ_RS03340at 635.595 kb on + strand, within MMJJ_RS03340at 635.617 kb on - strandat 635.656 kb on + strandat 635.671 kb on + strandat 635.671 kb on + strandat 635.696 kb on - strand, within MMJJ_RS03345at 635.722 kb on - strand, within MMJJ_RS03345at 635.723 kb on + strand, within MMJJ_RS03345at 635.737 kb on - strand, within MMJJ_RS03345at 635.738 kb on + strand, within MMJJ_RS03345at 635.763 kb on - strand, within MMJJ_RS03345at 635.763 kb on - strand, within MMJJ_RS03345at 635.763 kb on - strand, within MMJJ_RS03345at 635.764 kb on + strand, within MMJJ_RS03345at 635.764 kb on + strand, within MMJJ_RS03345at 635.771 kb on + strand, within MMJJ_RS03345at 635.813 kb on - strand, within MMJJ_RS03345at 635.857 kb on - strandat 635.954 kb on - strand, within MMJJ_RS03350at 635.992 kb on - strand, within MMJJ_RS03350at 636.000 kb on - strand, within MMJJ_RS03350at 636.169 kb on - strandat 636.169 kb on - strandat 636.173 kb on + strandat 636.178 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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633,895 + MMJJ_RS03325 0.83 -0.0
633,895 + MMJJ_RS03325 0.83 +0.1
633,895 + MMJJ_RS03325 0.83 +0.9
633,895 + MMJJ_RS03325 0.83 +1.0
633,898 - MMJJ_RS03325 0.83 -0.4
633,898 - MMJJ_RS03325 0.83 +0.1
633,898 - MMJJ_RS03325 0.83 -0.0
633,898 - MMJJ_RS03325 0.83 +0.7
633,899 + MMJJ_RS03325 0.83 +0.1
633,899 + MMJJ_RS03325 0.83 +2.1
633,899 + MMJJ_RS03325 0.83 -0.0
633,918 - MMJJ_RS03325 0.84 +0.4
633,919 + MMJJ_RS03325 0.84 +0.6
633,936 + MMJJ_RS03325 0.85 +0.5
633,957 + MMJJ_RS03325 0.86 -0.2
633,970 - MMJJ_RS03325 0.86 +0.1
633,970 - MMJJ_RS03325 0.86 -0.2
633,971 + MMJJ_RS03325 0.86 +0.0
633,971 + MMJJ_RS03325 0.86 +0.9
633,972 - MMJJ_RS03325 0.86 -0.1
633,974 - MMJJ_RS03325 0.86 +0.2
633,974 - MMJJ_RS03325 0.86 +0.7
634,006 - MMJJ_RS03325 0.88 +0.6
634,156 - +0.0
634,176 - -0.2
634,176 - -0.3
634,303 - +0.7
634,307 - -0.2
634,307 - +0.2
634,340 - -0.2
634,340 - +0.1
634,341 + -0.2
634,341 + +0.3
634,365 - MMJJ_RS03330 0.12 +0.4
634,365 - MMJJ_RS03330 0.12 +0.6
634,366 + MMJJ_RS03330 0.12 -0.3
634,369 - MMJJ_RS03330 0.13 +0.9
634,370 + MMJJ_RS03330 0.13 +0.1
634,427 + MMJJ_RS03330 0.23 -0.2
634,474 - MMJJ_RS03330 0.31 -0.4
634,481 - MMJJ_RS03330 0.32 -0.2
634,498 - MMJJ_RS03330 0.35 +0.7
634,498 - MMJJ_RS03330 0.35 -0.0
634,499 + MMJJ_RS03330 0.35 -0.4
634,502 + MMJJ_RS03330 0.35 +0.0
634,502 + MMJJ_RS03330 0.35 -0.5
634,502 + MMJJ_RS03330 0.35 -0.2
634,519 - MMJJ_RS03330 0.38 -0.1
634,546 - MMJJ_RS03330 0.43 +0.4
634,555 - MMJJ_RS03330 0.44 -0.2
634,556 + MMJJ_RS03330 0.45 -0.1
634,618 - MMJJ_RS03330 0.55 -0.1
634,618 - MMJJ_RS03330 0.55 +0.3
634,619 + MMJJ_RS03330 0.55 -0.0
634,623 + MMJJ_RS03330 0.56 -0.6
634,623 + MMJJ_RS03330 0.56 +0.3
634,661 + MMJJ_RS03330 0.63 -0.3
634,661 + MMJJ_RS03330 0.63 -0.0
634,718 - MMJJ_RS03330 0.72 +0.4
634,719 + MMJJ_RS03330 0.72 +0.5
634,719 + MMJJ_RS03330 0.72 +0.9
634,727 + MMJJ_RS03330 0.74 +1.1
634,727 + MMJJ_RS03330 0.74 +0.1
634,769 - MMJJ_RS03330 0.81 +0.6
634,770 + MMJJ_RS03330 0.81 -0.3
634,770 + MMJJ_RS03330 0.81 +0.2
634,779 + MMJJ_RS03330 0.83 -0.4
634,779 + MMJJ_RS03330 0.83 -0.2
634,779 + MMJJ_RS03330 0.83 -0.3
634,811 - MMJJ_RS03330 0.88 -0.1
634,812 + MMJJ_RS03330 0.88 -0.0
634,821 + +0.2
634,872 + +0.1
634,880 + -0.4
634,882 + +0.5
634,907 + -0.3
634,909 - +0.2
634,970 - MMJJ_RS03335 0.27 -0.8
635,057 - MMJJ_RS03335 0.56 -1.2
635,058 + MMJJ_RS03335 0.57 +0.2
635,058 + MMJJ_RS03335 0.57 -0.2
635,104 - MMJJ_RS03335 0.72 -0.3
635,121 - MMJJ_RS03335 0.78 -0.1
635,121 - MMJJ_RS03335 0.78 -0.4
635,121 - MMJJ_RS03335 0.78 -1.0
635,121 - MMJJ_RS03335 0.78 +2.1
635,121 - MMJJ_RS03335 0.78 -0.4
635,122 + MMJJ_RS03335 0.79 -0.7
635,122 + MMJJ_RS03335 0.79 -0.0
635,122 + MMJJ_RS03335 0.79 -0.4
635,123 - MMJJ_RS03335 0.79 +1.5
635,123 - MMJJ_RS03335 0.79 -0.0
635,124 + MMJJ_RS03335 0.79 +0.1
635,124 + MMJJ_RS03335 0.79 +0.4
635,124 + MMJJ_RS03335 0.79 +0.8
635,153 + MMJJ_RS03335 0.89 -0.9
635,185 + +0.5
635,185 + -0.4
635,234 + -0.5
635,234 + -0.7
635,234 + +0.1
635,235 - -0.1
635,257 + +0.9
635,304 - MMJJ_RS03340 0.12 -0.0
635,304 - MMJJ_RS03340 0.12 -0.4
635,305 + MMJJ_RS03340 0.12 -0.3
635,305 + MMJJ_RS03340 0.12 +0.2
635,306 - MMJJ_RS03340 0.12 -0.3
635,307 + MMJJ_RS03340 0.13 +0.1
635,307 + MMJJ_RS03340 0.13 +2.4
635,330 - MMJJ_RS03340 0.19 -0.5
635,372 - MMJJ_RS03340 0.29 -0.4
635,373 + MMJJ_RS03340 0.30 +0.3
635,373 + MMJJ_RS03340 0.30 +1.0
635,396 - MMJJ_RS03340 0.36 +0.9
635,397 + MMJJ_RS03340 0.36 -0.2
635,397 + MMJJ_RS03340 0.36 +0.3
635,408 + MMJJ_RS03340 0.39 +0.1
635,497 + MMJJ_RS03340 0.62 +0.3
635,587 + MMJJ_RS03340 0.85 +0.1
635,595 + MMJJ_RS03340 0.87 +0.5
635,595 + MMJJ_RS03340 0.87 -0.3
635,617 - -0.1
635,656 + -0.5
635,671 + -0.5
635,671 + -0.5
635,696 - MMJJ_RS03345 0.20 +2.3
635,722 - MMJJ_RS03345 0.32 +0.5
635,723 + MMJJ_RS03345 0.33 +0.3
635,737 - MMJJ_RS03345 0.40 +0.8
635,738 + MMJJ_RS03345 0.40 -0.3
635,763 - MMJJ_RS03345 0.52 +0.3
635,763 - MMJJ_RS03345 0.52 -1.0
635,763 - MMJJ_RS03345 0.52 +0.4
635,764 + MMJJ_RS03345 0.52 -0.1
635,764 + MMJJ_RS03345 0.52 +0.1
635,771 + MMJJ_RS03345 0.56 -0.1
635,813 - MMJJ_RS03345 0.76 -0.1
635,857 - -0.2
635,954 - MMJJ_RS03350 0.41 -0.4
635,992 - MMJJ_RS03350 0.58 +1.8
636,000 - MMJJ_RS03350 0.61 +0.8
636,169 - -0.4
636,169 - -0.6
636,173 + -0.7
636,178 + +3.3

Or see this region's nucleotide sequence