Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00860

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00855 and MMJJ_RS00860 are separated by 90 nucleotidesMMJJ_RS00860 and MMJJ_RS00865 are separated by 8 nucleotides MMJJ_RS00855: MMJJ_RS00855 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 162,419 to 164,383 _RS00855 MMJJ_RS00860: MMJJ_RS00860 - 4Fe-4S binding protein, at 164,474 to 165,667 _RS00860 MMJJ_RS00865: MMJJ_RS00865 - Ni/Fe hydrogenase subunit alpha, at 165,676 to 167,091 _RS00865 Position (kb) 164 165 166Strain fitness (log2 ratio) -1 0 1 2at 163.561 kb on + strand, within MMJJ_RS00855at 163.610 kb on - strand, within MMJJ_RS00855at 163.611 kb on + strand, within MMJJ_RS00855at 163.612 kb on - strand, within MMJJ_RS00855at 163.612 kb on - strand, within MMJJ_RS00855at 163.613 kb on + strand, within MMJJ_RS00855at 163.613 kb on + strand, within MMJJ_RS00855at 163.613 kb on + strand, within MMJJ_RS00855at 163.613 kb on + strand, within MMJJ_RS00855at 163.619 kb on - strand, within MMJJ_RS00855at 163.619 kb on - strand, within MMJJ_RS00855at 163.619 kb on - strand, within MMJJ_RS00855at 163.619 kb on - strand, within MMJJ_RS00855at 163.620 kb on + strand, within MMJJ_RS00855at 163.620 kb on + strand, within MMJJ_RS00855at 163.665 kb on - strand, within MMJJ_RS00855at 163.666 kb on + strand, within MMJJ_RS00855at 163.708 kb on + strand, within MMJJ_RS00855at 163.716 kb on + strand, within MMJJ_RS00855at 163.750 kb on - strand, within MMJJ_RS00855at 163.751 kb on + strand, within MMJJ_RS00855at 163.829 kb on - strand, within MMJJ_RS00855at 163.830 kb on + strand, within MMJJ_RS00855at 163.974 kb on - strand, within MMJJ_RS00855at 163.975 kb on + strand, within MMJJ_RS00855at 164.132 kb on - strand, within MMJJ_RS00855at 164.133 kb on + strand, within MMJJ_RS00855at 164.133 kb on + strand, within MMJJ_RS00855at 164.144 kb on + strand, within MMJJ_RS00855at 164.150 kb on + strand, within MMJJ_RS00855at 164.187 kb on + strandat 164.306 kb on - strandat 164.465 kb on - strandat 164.465 kb on - strandat 164.465 kb on - strandat 164.466 kb on + strandat 164.486 kb on - strandat 164.487 kb on + strandat 164.501 kb on + strandat 164.501 kb on + strandat 164.522 kb on + strandat 164.538 kb on + strandat 164.577 kb on + strandat 164.609 kb on + strand, within MMJJ_RS00860at 164.738 kb on + strand, within MMJJ_RS00860at 164.835 kb on + strand, within MMJJ_RS00860at 164.853 kb on - strand, within MMJJ_RS00860at 164.960 kb on - strand, within MMJJ_RS00860at 164.960 kb on - strand, within MMJJ_RS00860at 164.961 kb on + strand, within MMJJ_RS00860at 165.008 kb on - strand, within MMJJ_RS00860at 165.018 kb on + strand, within MMJJ_RS00860at 165.062 kb on - strand, within MMJJ_RS00860at 165.062 kb on - strand, within MMJJ_RS00860at 165.063 kb on + strand, within MMJJ_RS00860at 165.063 kb on + strand, within MMJJ_RS00860at 165.092 kb on + strand, within MMJJ_RS00860at 165.166 kb on - strand, within MMJJ_RS00860at 165.171 kb on - strand, within MMJJ_RS00860at 165.172 kb on + strand, within MMJJ_RS00860at 165.172 kb on + strand, within MMJJ_RS00860at 165.174 kb on + strand, within MMJJ_RS00860at 165.174 kb on + strand, within MMJJ_RS00860at 165.176 kb on + strand, within MMJJ_RS00860at 165.244 kb on - strand, within MMJJ_RS00860at 165.244 kb on - strand, within MMJJ_RS00860at 165.245 kb on + strand, within MMJJ_RS00860at 165.245 kb on + strand, within MMJJ_RS00860at 165.248 kb on - strand, within MMJJ_RS00860at 165.301 kb on - strand, within MMJJ_RS00860at 165.326 kb on - strand, within MMJJ_RS00860at 165.326 kb on - strand, within MMJJ_RS00860at 165.345 kb on - strand, within MMJJ_RS00860at 165.490 kb on - strand, within MMJJ_RS00860at 165.494 kb on + strand, within MMJJ_RS00860at 165.506 kb on - strand, within MMJJ_RS00860at 165.522 kb on + strand, within MMJJ_RS00860at 165.637 kb on - strandat 165.640 kb on + strandat 165.640 kb on + strandat 165.787 kb on - strandat 165.805 kb on - strandat 165.806 kb on + strandat 165.838 kb on - strand, within MMJJ_RS00865at 165.839 kb on + strand, within MMJJ_RS00865at 165.839 kb on + strand, within MMJJ_RS00865at 165.907 kb on - strand, within MMJJ_RS00865at 165.908 kb on + strand, within MMJJ_RS00865at 166.018 kb on - strand, within MMJJ_RS00865at 166.019 kb on + strand, within MMJJ_RS00865at 166.025 kb on + strand, within MMJJ_RS00865at 166.066 kb on - strand, within MMJJ_RS00865at 166.106 kb on - strand, within MMJJ_RS00865at 166.167 kb on + strand, within MMJJ_RS00865at 166.179 kb on - strand, within MMJJ_RS00865at 166.180 kb on + strand, within MMJJ_RS00865at 166.180 kb on + strand, within MMJJ_RS00865at 166.185 kb on - strand, within MMJJ_RS00865at 166.185 kb on - strand, within MMJJ_RS00865at 166.201 kb on - strand, within MMJJ_RS00865at 166.201 kb on - strand, within MMJJ_RS00865at 166.201 kb on - strand, within MMJJ_RS00865at 166.201 kb on - strand, within MMJJ_RS00865at 166.201 kb on - strand, within MMJJ_RS00865at 166.202 kb on + strand, within MMJJ_RS00865at 166.202 kb on + strand, within MMJJ_RS00865at 166.310 kb on - strand, within MMJJ_RS00865at 166.315 kb on - strand, within MMJJ_RS00865at 166.315 kb on - strand, within MMJJ_RS00865at 166.316 kb on + strand, within MMJJ_RS00865at 166.319 kb on - strand, within MMJJ_RS00865at 166.385 kb on - strand, within MMJJ_RS00865at 166.386 kb on + strand, within MMJJ_RS00865at 166.389 kb on - strand, within MMJJ_RS00865at 166.437 kb on + strand, within MMJJ_RS00865at 166.477 kb on - strand, within MMJJ_RS00865at 166.492 kb on - strand, within MMJJ_RS00865at 166.516 kb on - strand, within MMJJ_RS00865at 166.517 kb on + strand, within MMJJ_RS00865at 166.517 kb on + strand, within MMJJ_RS00865at 166.597 kb on - strand, within MMJJ_RS00865at 166.608 kb on - strand, within MMJJ_RS00865at 166.609 kb on + strand, within MMJJ_RS00865

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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163,561 + MMJJ_RS00855 0.58 -0.2
163,610 - MMJJ_RS00855 0.61 -0.0
163,611 + MMJJ_RS00855 0.61 +0.0
163,612 - MMJJ_RS00855 0.61 -0.3
163,612 - MMJJ_RS00855 0.61 -0.1
163,613 + MMJJ_RS00855 0.61 -0.3
163,613 + MMJJ_RS00855 0.61 -0.5
163,613 + MMJJ_RS00855 0.61 -0.8
163,613 + MMJJ_RS00855 0.61 -0.3
163,619 - MMJJ_RS00855 0.61 -0.1
163,619 - MMJJ_RS00855 0.61 -0.3
163,619 - MMJJ_RS00855 0.61 -0.4
163,619 - MMJJ_RS00855 0.61 +0.5
163,620 + MMJJ_RS00855 0.61 +0.4
163,620 + MMJJ_RS00855 0.61 -0.9
163,665 - MMJJ_RS00855 0.63 -0.2
163,666 + MMJJ_RS00855 0.63 +0.1
163,708 + MMJJ_RS00855 0.66 -0.4
163,716 + MMJJ_RS00855 0.66 -0.1
163,750 - MMJJ_RS00855 0.68 -0.2
163,751 + MMJJ_RS00855 0.68 +0.2
163,829 - MMJJ_RS00855 0.72 -0.3
163,830 + MMJJ_RS00855 0.72 -0.2
163,974 - MMJJ_RS00855 0.79 -0.2
163,975 + MMJJ_RS00855 0.79 +0.2
164,132 - MMJJ_RS00855 0.87 -0.4
164,133 + MMJJ_RS00855 0.87 +0.2
164,133 + MMJJ_RS00855 0.87 +0.5
164,144 + MMJJ_RS00855 0.88 +0.1
164,150 + MMJJ_RS00855 0.88 -0.0
164,187 + +0.2
164,306 - -0.3
164,465 - -0.7
164,465 - +0.1
164,465 - +0.0
164,466 + +0.1
164,486 - +0.3
164,487 + -0.0
164,501 + +0.2
164,501 + +0.2
164,522 + +0.9
164,538 + -0.3
164,577 + -1.0
164,609 + MMJJ_RS00860 0.11 -0.2
164,738 + MMJJ_RS00860 0.22 +0.3
164,835 + MMJJ_RS00860 0.30 -0.6
164,853 - MMJJ_RS00860 0.32 -0.3
164,960 - MMJJ_RS00860 0.41 -0.3
164,960 - MMJJ_RS00860 0.41 -1.2
164,961 + MMJJ_RS00860 0.41 -0.3
165,008 - MMJJ_RS00860 0.45 +0.2
165,018 + MMJJ_RS00860 0.46 -0.2
165,062 - MMJJ_RS00860 0.49 +0.6
165,062 - MMJJ_RS00860 0.49 +2.1
165,063 + MMJJ_RS00860 0.49 +0.3
165,063 + MMJJ_RS00860 0.49 +0.4
165,092 + MMJJ_RS00860 0.52 -0.2
165,166 - MMJJ_RS00860 0.58 -0.5
165,171 - MMJJ_RS00860 0.58 -0.1
165,172 + MMJJ_RS00860 0.58 +0.2
165,172 + MMJJ_RS00860 0.58 -0.0
165,174 + MMJJ_RS00860 0.59 -0.2
165,174 + MMJJ_RS00860 0.59 -0.1
165,176 + MMJJ_RS00860 0.59 -0.8
165,244 - MMJJ_RS00860 0.64 +0.1
165,244 - MMJJ_RS00860 0.64 -0.5
165,245 + MMJJ_RS00860 0.65 +0.1
165,245 + MMJJ_RS00860 0.65 +0.1
165,248 - MMJJ_RS00860 0.65 +0.2
165,301 - MMJJ_RS00860 0.69 -0.4
165,326 - MMJJ_RS00860 0.71 -0.0
165,326 - MMJJ_RS00860 0.71 -0.6
165,345 - MMJJ_RS00860 0.73 -0.6
165,490 - MMJJ_RS00860 0.85 -0.3
165,494 + MMJJ_RS00860 0.85 -1.0
165,506 - MMJJ_RS00860 0.86 -0.3
165,522 + MMJJ_RS00860 0.88 -0.1
165,637 - +0.9
165,640 + +0.2
165,640 + +1.1
165,787 - +0.4
165,805 - -0.9
165,806 + -0.2
165,838 - MMJJ_RS00865 0.11 -0.1
165,839 + MMJJ_RS00865 0.12 +0.7
165,839 + MMJJ_RS00865 0.12 -0.2
165,907 - MMJJ_RS00865 0.16 +0.5
165,908 + MMJJ_RS00865 0.16 -0.5
166,018 - MMJJ_RS00865 0.24 +0.1
166,019 + MMJJ_RS00865 0.24 -0.5
166,025 + MMJJ_RS00865 0.25 +0.5
166,066 - MMJJ_RS00865 0.28 +0.3
166,106 - MMJJ_RS00865 0.30 -1.5
166,167 + MMJJ_RS00865 0.35 -0.3
166,179 - MMJJ_RS00865 0.36 +0.1
166,180 + MMJJ_RS00865 0.36 +0.0
166,180 + MMJJ_RS00865 0.36 +1.2
166,185 - MMJJ_RS00865 0.36 +0.4
166,185 - MMJJ_RS00865 0.36 -0.5
166,201 - MMJJ_RS00865 0.37 +0.4
166,201 - MMJJ_RS00865 0.37 +0.3
166,201 - MMJJ_RS00865 0.37 -0.2
166,201 - MMJJ_RS00865 0.37 +0.4
166,201 - MMJJ_RS00865 0.37 +0.3
166,202 + MMJJ_RS00865 0.37 +1.8
166,202 + MMJJ_RS00865 0.37 +1.1
166,310 - MMJJ_RS00865 0.45 -0.7
166,315 - MMJJ_RS00865 0.45 -0.0
166,315 - MMJJ_RS00865 0.45 +0.0
166,316 + MMJJ_RS00865 0.45 -0.3
166,319 - MMJJ_RS00865 0.45 +0.1
166,385 - MMJJ_RS00865 0.50 +0.2
166,386 + MMJJ_RS00865 0.50 -0.3
166,389 - MMJJ_RS00865 0.50 -0.3
166,437 + MMJJ_RS00865 0.54 +0.9
166,477 - MMJJ_RS00865 0.57 -0.8
166,492 - MMJJ_RS00865 0.58 +0.2
166,516 - MMJJ_RS00865 0.59 +0.0
166,517 + MMJJ_RS00865 0.59 -0.4
166,517 + MMJJ_RS00865 0.59 +0.3
166,597 - MMJJ_RS00865 0.65 -0.4
166,608 - MMJJ_RS00865 0.66 -1.1
166,609 + MMJJ_RS00865 0.66 +0.6

Or see this region's nucleotide sequence