Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28920

Experiment: Dimethyl Sulfoxide 6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28915 and BPHYT_RS28920 are separated by 554 nucleotidesBPHYT_RS28920 and BPHYT_RS28925 are separated by 184 nucleotides BPHYT_RS28915: BPHYT_RS28915 - diguanylate cyclase, at 2,036,510 to 2,037,655 _RS28915 BPHYT_RS28920: BPHYT_RS28920 - cellulose synthase, at 2,038,210 to 2,038,665 _RS28920 BPHYT_RS28925: BPHYT_RS28925 - hypothetical protein, at 2,038,850 to 2,039,749 _RS28925 Position (kb) 2038 2039Strain fitness (log2 ratio) -1 0 1at 2037.210 kb on + strand, within BPHYT_RS28915at 2037.211 kb on - strand, within BPHYT_RS28915at 2037.214 kb on + strand, within BPHYT_RS28915at 2037.215 kb on - strand, within BPHYT_RS28915at 2037.215 kb on - strand, within BPHYT_RS28915at 2037.433 kb on + strand, within BPHYT_RS28915at 2037.434 kb on - strand, within BPHYT_RS28915at 2037.851 kb on - strandat 2038.010 kb on + strandat 2038.023 kb on + strandat 2038.054 kb on - strandat 2038.082 kb on + strandat 2038.120 kb on - strandat 2038.167 kb on - strandat 2038.615 kb on + strand, within BPHYT_RS28920at 2038.809 kb on - strandat 2038.809 kb on - strandat 2038.969 kb on - strand, within BPHYT_RS28925

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6 vol%
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2,037,210 + BPHYT_RS28915 0.61 +0.0
2,037,211 - BPHYT_RS28915 0.61 -0.2
2,037,214 + BPHYT_RS28915 0.61 -0.2
2,037,215 - BPHYT_RS28915 0.62 +0.3
2,037,215 - BPHYT_RS28915 0.62 -0.5
2,037,433 + BPHYT_RS28915 0.81 +0.4
2,037,434 - BPHYT_RS28915 0.81 -0.5
2,037,851 - +0.7
2,038,010 + -0.6
2,038,023 + -0.5
2,038,054 - +0.4
2,038,082 + -0.1
2,038,120 - -0.2
2,038,167 - -0.1
2,038,615 + BPHYT_RS28920 0.89 -0.9
2,038,809 - +0.9
2,038,809 - +0.2
2,038,969 - BPHYT_RS28925 0.13 +0.4

Or see this region's nucleotide sequence