Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27155

Experiment: Dimethyl Sulfoxide 6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27150 and BPHYT_RS27155 are separated by 191 nucleotidesBPHYT_RS27155 and BPHYT_RS27160 are separated by 349 nucleotidesBPHYT_RS27160 and BPHYT_RS27165 are separated by 259 nucleotides BPHYT_RS27150: BPHYT_RS27150 - patatin, at 1,669,513 to 1,670,625 _RS27150 BPHYT_RS27155: BPHYT_RS27155 - peroxiredoxin, at 1,670,817 to 1,671,242 _RS27155 BPHYT_RS27160: BPHYT_RS27160 - hypothetical protein, at 1,671,592 to 1,671,900 _RS27160 BPHYT_RS27165: BPHYT_RS27165 - 4-carboxymuconolactone decarboxylase, at 1,672,160 to 1,672,714 _RS27165 Position (kb) 1670 1671 1672Strain fitness (log2 ratio) -2 -1 0 1at 1669.882 kb on + strand, within BPHYT_RS27150at 1669.883 kb on - strand, within BPHYT_RS27150at 1669.883 kb on - strand, within BPHYT_RS27150at 1669.984 kb on + strand, within BPHYT_RS27150at 1670.116 kb on + strand, within BPHYT_RS27150at 1670.132 kb on - strand, within BPHYT_RS27150at 1670.206 kb on + strandat 1670.634 kb on - strandat 1671.149 kb on - strand, within BPHYT_RS27155at 1671.751 kb on + strand, within BPHYT_RS27160at 1671.969 kb on - strandat 1672.102 kb on + strandat 1672.131 kb on + strandat 1672.131 kb on + strandat 1672.161 kb on + strandat 1672.161 kb on + strandat 1672.191 kb on - strandat 1672.239 kb on + strand, within BPHYT_RS27165at 1672.239 kb on + strand, within BPHYT_RS27165

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6 vol%
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1,669,882 + BPHYT_RS27150 0.33 -0.1
1,669,883 - BPHYT_RS27150 0.33 -0.1
1,669,883 - BPHYT_RS27150 0.33 +0.1
1,669,984 + BPHYT_RS27150 0.42 +0.3
1,670,116 + BPHYT_RS27150 0.54 -0.1
1,670,132 - BPHYT_RS27150 0.56 -1.2
1,670,206 + -0.1
1,670,634 - +0.3
1,671,149 - BPHYT_RS27155 0.78 -0.7
1,671,751 + BPHYT_RS27160 0.51 -0.2
1,671,969 - -0.7
1,672,102 + -0.8
1,672,131 + -0.3
1,672,131 + +0.3
1,672,161 + -0.0
1,672,161 + -1.8
1,672,191 - -0.1
1,672,239 + BPHYT_RS27165 0.14 -0.6
1,672,239 + BPHYT_RS27165 0.14 -0.7

Or see this region's nucleotide sequence