Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22455

Experiment: Dimethyl Sulfoxide 6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22450 and BPHYT_RS22455 overlap by 4 nucleotidesBPHYT_RS22455 and BPHYT_RS22460 are separated by 41 nucleotides BPHYT_RS22450: BPHYT_RS22450 - phosphonate ABC transporter permease, at 592,397 to 593,239 _RS22450 BPHYT_RS22455: BPHYT_RS22455 - phosphonate ABC transporter substrate-binding protein, at 593,236 to 594,213 _RS22455 BPHYT_RS22460: BPHYT_RS22460 - phosphonate ABC transporter ATP-binidng protein, at 594,255 to 595,160 _RS22460 Position (kb) 593 594 595Strain fitness (log2 ratio) -1 0 1at 592.378 kb on + strandat 592.378 kb on + strandat 592.378 kb on + strandat 592.379 kb on - strandat 592.489 kb on - strand, within BPHYT_RS22450at 592.513 kb on - strand, within BPHYT_RS22450at 592.590 kb on - strand, within BPHYT_RS22450at 592.968 kb on + strand, within BPHYT_RS22450at 592.968 kb on + strand, within BPHYT_RS22450at 592.969 kb on - strand, within BPHYT_RS22450at 592.969 kb on - strand, within BPHYT_RS22450at 592.969 kb on - strand, within BPHYT_RS22450at 592.969 kb on - strand, within BPHYT_RS22450at 594.011 kb on + strand, within BPHYT_RS22455at 595.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6 vol%
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592,378 + -0.2
592,378 + +0.2
592,378 + -0.0
592,379 - +0.1
592,489 - BPHYT_RS22450 0.11 +0.7
592,513 - BPHYT_RS22450 0.14 -0.5
592,590 - BPHYT_RS22450 0.23 +0.2
592,968 + BPHYT_RS22450 0.68 -0.9
592,968 + BPHYT_RS22450 0.68 -0.2
592,969 - BPHYT_RS22450 0.68 +0.1
592,969 - BPHYT_RS22450 0.68 -0.1
592,969 - BPHYT_RS22450 0.68 -0.0
592,969 - BPHYT_RS22450 0.68 -0.7
594,011 + BPHYT_RS22455 0.79 -1.1
595,165 - -0.3

Or see this region's nucleotide sequence