Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19305

Experiment: Dimethyl Sulfoxide 6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 6 vol%
4,332,851	+		BPHYT_RS19300	0.11	-0.1
4,332,859	+		BPHYT_RS19300	0.12	-1.4
4,332,859	+		BPHYT_RS19300	0.12	+0.1
4,332,859	+		BPHYT_RS19300	0.12	+0.2
4,332,860	-		BPHYT_RS19300	0.12	+0.1
4,332,860	-		BPHYT_RS19300	0.12	+0.0
4,333,000	+		BPHYT_RS19300	0.28	+0.1
4,333,001	-		BPHYT_RS19300	0.28	-0.4
4,333,002	+		BPHYT_RS19300	0.28	+0.0
4,333,002	+		BPHYT_RS19300	0.28	-0.6
4,333,062	+		BPHYT_RS19300	0.34	-1.1
4,333,063	-		BPHYT_RS19300	0.35	-0.2
4,333,171	+		BPHYT_RS19300	0.47	-0.3
4,333,204	+		BPHYT_RS19300	0.50	-0.6
4,333,204	+		BPHYT_RS19300	0.50	+0.1
4,333,205	-		BPHYT_RS19300	0.50	-1.1
4,333,205	-		BPHYT_RS19300	0.50	+0.1
4,333,205	-		BPHYT_RS19300	0.50	+0.5
4,333,435	+		BPHYT_RS19300	0.76	+0.3
4,333,435	+		BPHYT_RS19300	0.76	+0.0
4,333,435	+		BPHYT_RS19300	0.76	+0.6
4,333,436	-		BPHYT_RS19300	0.76	+0.5
4,333,436	-		BPHYT_RS19300	0.76	-0.1
4,333,436	-		BPHYT_RS19300	0.76	-0.1
4,333,543	+		BPHYT_RS19300	0.88	-1.0
4,333,543	+		BPHYT_RS19300	0.88	+0.3
4,333,543	+		BPHYT_RS19300	0.88	-0.4
4,333,543	+		BPHYT_RS19300	0.88	+0.5
4,333,544	-				+1.2
4,333,545	+		BPHYT_RS19300	0.88	-0.1
4,333,545	+		BPHYT_RS19300	0.88	+0.6
4,333,545	+		BPHYT_RS19300	0.88	-0.0
4,333,545	+		BPHYT_RS19300	0.88	-0.9
4,333,545	+		BPHYT_RS19300	0.88	+0.6
4,333,545	+		BPHYT_RS19300	0.88	-0.1
4,333,545	+		BPHYT_RS19300	0.88	-0.0
4,333,546	-		BPHYT_RS19300	0.88	-0.0
4,333,546	-		BPHYT_RS19300	0.88	+0.2
4,333,546	-		BPHYT_RS19300	0.88	-0.3
4,333,546	-		BPHYT_RS19300	0.88	+0.6
4,333,546	-		BPHYT_RS19300	0.88	+0.1
4,333,546	-		BPHYT_RS19300	0.88	+0.2
4,333,549	+		BPHYT_RS19300	0.88	-0.1
4,333,549	+		BPHYT_RS19300	0.88	-2.1
4,333,549	+		BPHYT_RS19300	0.88	-0.1
4,333,549	+		BPHYT_RS19300	0.88	-1.3
4,333,549	+		BPHYT_RS19300	0.88	+0.1
4,333,549	+		BPHYT_RS19300	0.88	+0.8
4,333,549	+		BPHYT_RS19300	0.88	-0.1
4,333,550	-		BPHYT_RS19300	0.88	-0.5
4,333,550	-		BPHYT_RS19300	0.88	+0.8
4,333,550	-		BPHYT_RS19300	0.88	-0.1
4,333,550	-		BPHYT_RS19300	0.88	-1.6
4,333,550	-		BPHYT_RS19300	0.88	-0.3
4,333,631	-				+0.5
4,333,651	+				+0.2
4,333,652	-				+0.8
4,333,652	-				+0.7
4,333,724	+				+1.1
4,333,727	-				-0.1
4,333,983	-				-1.4
4,334,381	+		BPHYT_RS19305	0.29	-1.3
4,334,382	-		BPHYT_RS19305	0.29	-0.8
4,334,525	+		BPHYT_RS19305	0.36	-0.6
4,334,526	-				+0.2
4,334,526	-		BPHYT_RS19305	0.36	-1.0
4,334,526	-		BPHYT_RS19305	0.36	-0.1
4,334,613	+		BPHYT_RS19305	0.40	-1.2
4,334,729	+		BPHYT_RS19305	0.46	-0.8
4,334,730	-		BPHYT_RS19305	0.46	-0.1
4,334,730	-		BPHYT_RS19305	0.46	-0.4
4,334,802	-		BPHYT_RS19305	0.49	-0.7
4,334,802	-		BPHYT_RS19305	0.49	-2.8
4,335,164	+		BPHYT_RS19305	0.66	-0.6
4,335,165	-		BPHYT_RS19305	0.66	-1.2
4,335,189	-		BPHYT_RS19305	0.68	+0.0
4,335,302	+		BPHYT_RS19305	0.73	-1.5
4,335,302	+		BPHYT_RS19305	0.73	-0.3
4,335,324	-		BPHYT_RS19305	0.74	+0.0
4,335,882	+				-1.4
4,335,883	-				-0.1
4,336,041	+				-1.8
4,336,321	+		BPHYT_RS19310	0.13	-2.2
4,336,322	-		BPHYT_RS19310	0.13	+0.0
4,336,539	-		BPHYT_RS19310	0.34	-1.4
4,336,539	-		BPHYT_RS19310	0.34	+0.5
4,336,813	+		BPHYT_RS19310	0.60	+1.1
4,336,813	+		BPHYT_RS19310	0.60	-0.4
4,336,813	+		BPHYT_RS19310	0.60	-0.2
4,336,814	-		BPHYT_RS19310	0.60	-0.0