Experiment: Dimethyl Sulfoxide 6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18695 and BPHYT_RS18700 are separated by 35 nucleotides BPHYT_RS18700 and BPHYT_RS18705 are separated by 7 nucleotides BPHYT_RS18705 and BPHYT_RS18710 are separated by 11 nucleotides BPHYT_RS18710 and BPHYT_RS18715 are separated by 129 nucleotides
BPHYT_RS18695: BPHYT_RS18695 - ABC transporter, at 4,203,597 to 4,205,240
_RS18695
BPHYT_RS18700: BPHYT_RS18700 - hypothetical protein, at 4,205,276 to 4,205,533
_RS18700
BPHYT_RS18705: BPHYT_RS18705 - 5,10-methylenetetrahydrofolate reductase, at 4,205,541 to 4,206,371
_RS18705
BPHYT_RS18710: BPHYT_RS18710 - membrane protein, at 4,206,383 to 4,206,736
_RS18710
BPHYT_RS18715: BPHYT_RS18715 - adenosylhomocysteinase, at 4,206,866 to 4,208,287
_RS18715
Position (kb) 4205
4206
4207 Strain fitness (log2 ratio) -2
-1
0
1 at 4204.624 kb on + strand, within BPHYT_RS18695 at 4204.723 kb on + strand, within BPHYT_RS18695 at 4204.723 kb on + strand, within BPHYT_RS18695 at 4204.723 kb on + strand, within BPHYT_RS18695 at 4204.724 kb on - strand, within BPHYT_RS18695 at 4204.724 kb on - strand, within BPHYT_RS18695 at 4204.780 kb on + strand, within BPHYT_RS18695 at 4204.781 kb on - strand, within BPHYT_RS18695 at 4204.781 kb on - strand, within BPHYT_RS18695 at 4204.840 kb on + strand, within BPHYT_RS18695 at 4204.840 kb on + strand, within BPHYT_RS18695 at 4204.840 kb on + strand, within BPHYT_RS18695 at 4204.840 kb on + strand, within BPHYT_RS18695 at 4204.931 kb on + strand, within BPHYT_RS18695 at 4204.931 kb on + strand, within BPHYT_RS18695 at 4204.932 kb on - strand, within BPHYT_RS18695 at 4204.932 kb on - strand, within BPHYT_RS18695 at 4204.932 kb on - strand, within BPHYT_RS18695 at 4204.933 kb on + strand, within BPHYT_RS18695 at 4204.934 kb on - strand, within BPHYT_RS18695 at 4204.954 kb on - strand, within BPHYT_RS18695 at 4205.024 kb on - strand, within BPHYT_RS18695 at 4205.024 kb on - strand, within BPHYT_RS18695 at 4205.032 kb on + strand, within BPHYT_RS18695 at 4205.066 kb on - strand, within BPHYT_RS18695 at 4205.066 kb on - strand, within BPHYT_RS18695 at 4205.283 kb on + strand at 4205.283 kb on + strand at 4205.283 kb on + strand at 4205.284 kb on - strand at 4205.316 kb on + strand, within BPHYT_RS18700 at 4205.316 kb on + strand, within BPHYT_RS18700 at 4205.317 kb on - strand, within BPHYT_RS18700 at 4205.351 kb on - strand, within BPHYT_RS18700 at 4205.351 kb on - strand, within BPHYT_RS18700 at 4205.439 kb on - strand, within BPHYT_RS18700 at 4205.597 kb on - strand at 4205.597 kb on - strand at 4205.870 kb on - strand, within BPHYT_RS18705 at 4205.957 kb on - strand, within BPHYT_RS18705 at 4206.011 kb on + strand, within BPHYT_RS18705 at 4206.409 kb on + strand at 4206.410 kb on - strand at 4206.442 kb on - strand, within BPHYT_RS18710 at 4206.681 kb on + strand, within BPHYT_RS18710 at 4206.682 kb on - strand, within BPHYT_RS18710 at 4206.682 kb on - strand, within BPHYT_RS18710 at 4206.738 kb on + strand at 4206.738 kb on + strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6 vol% remove 4,204,624 + BPHYT_RS18695 0.62 +0.4 4,204,723 + BPHYT_RS18695 0.68 -0.6 4,204,723 + BPHYT_RS18695 0.68 +0.2 4,204,723 + BPHYT_RS18695 0.68 -0.3 4,204,724 - BPHYT_RS18695 0.69 +0.1 4,204,724 - BPHYT_RS18695 0.69 +0.5 4,204,780 + BPHYT_RS18695 0.72 +0.4 4,204,781 - BPHYT_RS18695 0.72 +0.2 4,204,781 - BPHYT_RS18695 0.72 -0.3 4,204,840 + BPHYT_RS18695 0.76 -0.1 4,204,840 + BPHYT_RS18695 0.76 +0.3 4,204,840 + BPHYT_RS18695 0.76 +0.3 4,204,840 + BPHYT_RS18695 0.76 +0.5 4,204,931 + BPHYT_RS18695 0.81 -0.3 4,204,931 + BPHYT_RS18695 0.81 -0.1 4,204,932 - BPHYT_RS18695 0.81 -0.1 4,204,932 - BPHYT_RS18695 0.81 -0.6 4,204,932 - BPHYT_RS18695 0.81 +0.3 4,204,933 + BPHYT_RS18695 0.81 +0.9 4,204,934 - BPHYT_RS18695 0.81 -0.0 4,204,954 - BPHYT_RS18695 0.83 -1.7 4,205,024 - BPHYT_RS18695 0.87 -0.1 4,205,024 - BPHYT_RS18695 0.87 -0.4 4,205,032 + BPHYT_RS18695 0.87 +0.9 4,205,066 - BPHYT_RS18695 0.89 -0.5 4,205,066 - BPHYT_RS18695 0.89 -0.4 4,205,283 + +0.4 4,205,283 + -0.1 4,205,283 + +0.2 4,205,284 - +0.4 4,205,316 + BPHYT_RS18700 0.16 -0.6 4,205,316 + BPHYT_RS18700 0.16 +0.1 4,205,317 - BPHYT_RS18700 0.16 +0.1 4,205,351 - BPHYT_RS18700 0.29 +0.1 4,205,351 - BPHYT_RS18700 0.29 -1.2 4,205,439 - BPHYT_RS18700 0.63 +0.6 4,205,597 - -2.2 4,205,597 - -0.2 4,205,870 - BPHYT_RS18705 0.40 -1.0 4,205,957 - BPHYT_RS18705 0.50 -2.2 4,206,011 + BPHYT_RS18705 0.57 +1.3 4,206,409 + -0.8 4,206,410 - +0.1 4,206,442 - BPHYT_RS18710 0.17 -1.4 4,206,681 + BPHYT_RS18710 0.84 -0.2 4,206,682 - BPHYT_RS18710 0.84 +0.1 4,206,682 - BPHYT_RS18710 0.84 -1.6 4,206,738 + -2.0 4,206,738 + -0.8 4,206,739 - +0.2 4,206,739 - -0.4 4,206,739 - -0.5 4,206,739 - +0.6 4,206,739 - -1.3 4,206,739 - -1.5 4,206,739 - +0.2 4,206,781 - -0.4
Or see this region's nucleotide sequence