Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04255

Experiment: Dimethyl Sulfoxide 6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04245 and BPHYT_RS04250 are separated by 97 nucleotidesBPHYT_RS04250 and BPHYT_RS04255 are separated by 49 nucleotidesBPHYT_RS04255 and BPHYT_RS04260 are separated by 193 nucleotides BPHYT_RS04245: BPHYT_RS04245 - dihydroorotase, at 972,638 to 973,915 _RS04245 BPHYT_RS04250: BPHYT_RS04250 - glycerol acyltransferase, at 974,013 to 974,858 _RS04250 BPHYT_RS04255: BPHYT_RS04255 - diadenosine tetraphosphatase, at 974,908 to 975,786 _RS04255 BPHYT_RS04260: BPHYT_RS04260 - GDP-6-deoxy-D-lyxo-4-hexulose reductase, at 975,980 to 976,891 _RS04260 Position (kb) 974 975 976Strain fitness (log2 ratio) -2 -1 0 1at 973.931 kb on + strandat 973.931 kb on + strandat 973.932 kb on - strandat 973.949 kb on + strandat 973.950 kb on - strandat 973.952 kb on - strandat 973.952 kb on - strandat 974.031 kb on - strandat 974.244 kb on + strand, within BPHYT_RS04250at 974.244 kb on + strand, within BPHYT_RS04250at 974.244 kb on + strand, within BPHYT_RS04250at 974.244 kb on + strand, within BPHYT_RS04250at 974.244 kb on + strand, within BPHYT_RS04250at 974.244 kb on + strand, within BPHYT_RS04250at 974.244 kb on + strand, within BPHYT_RS04250at 974.244 kb on + strand, within BPHYT_RS04250at 974.244 kb on + strand, within BPHYT_RS04250at 974.245 kb on - strand, within BPHYT_RS04250at 974.245 kb on - strand, within BPHYT_RS04250at 974.245 kb on - strand, within BPHYT_RS04250at 974.279 kb on - strand, within BPHYT_RS04250at 974.538 kb on + strand, within BPHYT_RS04250at 974.538 kb on + strand, within BPHYT_RS04250at 974.538 kb on + strand, within BPHYT_RS04250at 974.539 kb on - strand, within BPHYT_RS04250at 974.539 kb on - strand, within BPHYT_RS04250at 974.577 kb on + strand, within BPHYT_RS04250at 974.577 kb on + strand, within BPHYT_RS04250at 974.578 kb on - strand, within BPHYT_RS04250at 974.578 kb on - strand, within BPHYT_RS04250at 974.579 kb on + strand, within BPHYT_RS04250at 974.645 kb on + strand, within BPHYT_RS04250at 974.645 kb on + strand, within BPHYT_RS04250at 974.646 kb on - strand, within BPHYT_RS04250at 974.649 kb on + strand, within BPHYT_RS04250at 974.649 kb on + strand, within BPHYT_RS04250at 974.650 kb on - strand, within BPHYT_RS04250at 974.650 kb on - strand, within BPHYT_RS04250at 974.650 kb on - strand, within BPHYT_RS04250at 974.650 kb on - strand, within BPHYT_RS04250at 974.650 kb on - strand, within BPHYT_RS04250at 974.868 kb on + strandat 974.868 kb on + strandat 974.868 kb on + strandat 974.909 kb on + strandat 974.909 kb on + strandat 974.909 kb on + strandat 974.909 kb on - strandat 974.910 kb on - strandat 974.910 kb on - strandat 974.910 kb on - strandat 975.477 kb on + strand, within BPHYT_RS04255at 975.771 kb on + strandat 975.772 kb on - strandat 975.772 kb on - strandat 975.772 kb on - strandat 975.809 kb on + strandat 975.809 kb on + strandat 975.857 kb on + strandat 975.867 kb on + strandat 975.867 kb on + strandat 975.867 kb on + strandat 975.868 kb on - strandat 975.868 kb on - strandat 975.868 kb on - strandat 976.006 kb on + strandat 976.013 kb on - strandat 976.196 kb on + strand, within BPHYT_RS04260at 976.197 kb on - strand, within BPHYT_RS04260at 976.228 kb on - strand, within BPHYT_RS04260at 976.353 kb on - strand, within BPHYT_RS04260at 976.496 kb on + strand, within BPHYT_RS04260at 976.497 kb on - strand, within BPHYT_RS04260at 976.498 kb on + strand, within BPHYT_RS04260at 976.499 kb on - strand, within BPHYT_RS04260at 976.619 kb on + strand, within BPHYT_RS04260at 976.634 kb on + strand, within BPHYT_RS04260at 976.634 kb on + strand, within BPHYT_RS04260at 976.635 kb on - strand, within BPHYT_RS04260

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6 vol%
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973,931 + +0.9
973,931 + -0.1
973,932 - +0.4
973,949 + +0.4
973,950 - +0.3
973,952 - +0.6
973,952 - -0.3
974,031 - -0.1
974,244 + BPHYT_RS04250 0.27 -0.2
974,244 + BPHYT_RS04250 0.27 -0.4
974,244 + BPHYT_RS04250 0.27 -0.0
974,244 + BPHYT_RS04250 0.27 +0.7
974,244 + BPHYT_RS04250 0.27 -0.3
974,244 + BPHYT_RS04250 0.27 +0.0
974,244 + BPHYT_RS04250 0.27 -0.4
974,244 + BPHYT_RS04250 0.27 +0.2
974,244 + BPHYT_RS04250 0.27 +1.4
974,245 - BPHYT_RS04250 0.27 +0.3
974,245 - BPHYT_RS04250 0.27 +0.2
974,245 - BPHYT_RS04250 0.27 -0.2
974,279 - BPHYT_RS04250 0.31 -1.4
974,538 + BPHYT_RS04250 0.62 -0.1
974,538 + BPHYT_RS04250 0.62 -0.0
974,538 + BPHYT_RS04250 0.62 -0.2
974,539 - BPHYT_RS04250 0.62 +0.1
974,539 - BPHYT_RS04250 0.62 -0.1
974,577 + BPHYT_RS04250 0.67 +0.2
974,577 + BPHYT_RS04250 0.67 -0.2
974,578 - BPHYT_RS04250 0.67 +0.3
974,578 - BPHYT_RS04250 0.67 -0.7
974,579 + BPHYT_RS04250 0.67 -0.6
974,645 + BPHYT_RS04250 0.75 -0.0
974,645 + BPHYT_RS04250 0.75 +0.6
974,646 - BPHYT_RS04250 0.75 +0.4
974,649 + BPHYT_RS04250 0.75 -0.3
974,649 + BPHYT_RS04250 0.75 +0.1
974,650 - BPHYT_RS04250 0.75 -0.3
974,650 - BPHYT_RS04250 0.75 +0.6
974,650 - BPHYT_RS04250 0.75 +0.0
974,650 - BPHYT_RS04250 0.75 +0.2
974,650 - BPHYT_RS04250 0.75 +1.1
974,868 + +0.1
974,868 + -0.1
974,868 + +0.1
974,909 + +0.2
974,909 + -0.2
974,909 + -0.3
974,909 - -0.6
974,910 - -0.4
974,910 - +0.1
974,910 - -0.6
975,477 + BPHYT_RS04255 0.65 -0.9
975,771 + -0.1
975,772 - -0.4
975,772 - -1.3
975,772 - +0.7
975,809 + -0.9
975,809 + +1.7
975,857 + +0.2
975,867 + +0.2
975,867 + -0.4
975,867 + -0.4
975,868 - -0.2
975,868 - -0.1
975,868 - +0.1
976,006 + -0.4
976,013 - -0.4
976,196 + BPHYT_RS04260 0.24 +0.7
976,197 - BPHYT_RS04260 0.24 -0.3
976,228 - BPHYT_RS04260 0.27 -2.6
976,353 - BPHYT_RS04260 0.41 -0.1
976,496 + BPHYT_RS04260 0.57 +0.1
976,497 - BPHYT_RS04260 0.57 +0.2
976,498 + BPHYT_RS04260 0.57 -0.1
976,499 - BPHYT_RS04260 0.57 +0.7
976,619 + BPHYT_RS04260 0.70 -0.3
976,634 + BPHYT_RS04260 0.72 -0.4
976,634 + BPHYT_RS04260 0.72 -0.0
976,635 - BPHYT_RS04260 0.72 -0.1

Or see this region's nucleotide sequence