Experiment: Dimethyl Sulfoxide 6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02960 and BPHYT_RS02965 are separated by 184 nucleotides BPHYT_RS02965 and BPHYT_RS02970 are separated by 37 nucleotides
BPHYT_RS02960: BPHYT_RS02960 - peptidase, at 657,164 to 658,390
_RS02960
BPHYT_RS02965: BPHYT_RS02965 - membrane protein, at 658,575 to 659,660
_RS02965
BPHYT_RS02970: BPHYT_RS02970 - excinuclease ABC subunit A, at 659,698 to 662,571
_RS02970
Position (kb) 658
659
660 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 657.799 kb on + strand, within BPHYT_RS02960 at 657.799 kb on + strand, within BPHYT_RS02960 at 657.799 kb on + strand, within BPHYT_RS02960 at 657.800 kb on - strand, within BPHYT_RS02960 at 657.800 kb on - strand, within BPHYT_RS02960 at 657.800 kb on - strand, within BPHYT_RS02960 at 657.800 kb on - strand, within BPHYT_RS02960 at 657.801 kb on + strand, within BPHYT_RS02960 at 657.978 kb on + strand, within BPHYT_RS02960 at 658.142 kb on - strand, within BPHYT_RS02960 at 658.142 kb on - strand, within BPHYT_RS02960 at 658.170 kb on + strand, within BPHYT_RS02960 at 658.171 kb on - strand, within BPHYT_RS02960 at 658.171 kb on - strand, within BPHYT_RS02960 at 658.610 kb on + strand at 658.613 kb on - strand at 659.066 kb on + strand, within BPHYT_RS02965 at 659.066 kb on + strand, within BPHYT_RS02965 at 659.067 kb on - strand, within BPHYT_RS02965 at 659.540 kb on + strand, within BPHYT_RS02965 at 659.543 kb on - strand, within BPHYT_RS02965 at 659.614 kb on - strand at 659.666 kb on - strand at 659.666 kb on - strand at 659.696 kb on - strand at 659.700 kb on - strand at 659.892 kb on + strand at 659.895 kb on + strand at 659.895 kb on + strand at 659.896 kb on - strand at 659.977 kb on + strand at 659.977 kb on + strand at 659.977 kb on + strand at 659.977 kb on + strand at 659.977 kb on + strand at 659.977 kb on + strand at 659.977 kb on + strand at 659.978 kb on - strand at 659.981 kb on + strand at 659.981 kb on + strand at 659.981 kb on + strand at 659.981 kb on + strand at 659.981 kb on + strand at 659.981 kb on + strand at 659.981 kb on + strand at 659.982 kb on - strand at 659.982 kb on - strand at 659.982 kb on - strand at 659.983 kb on + strand at 659.983 kb on + strand at 660.022 kb on + strand, within BPHYT_RS02970 at 660.022 kb on + strand, within BPHYT_RS02970 at 660.022 kb on + strand, within BPHYT_RS02970 at 660.022 kb on + strand, within BPHYT_RS02970 at 660.084 kb on - strand, within BPHYT_RS02970 at 660.152 kb on + strand, within BPHYT_RS02970 at 660.152 kb on + strand, within BPHYT_RS02970 at 660.203 kb on + strand, within BPHYT_RS02970 at 660.204 kb on - strand, within BPHYT_RS02970 at 660.230 kb on + strand, within BPHYT_RS02970 at 660.263 kb on + strand, within BPHYT_RS02970 at 660.263 kb on + strand, within BPHYT_RS02970 at 660.263 kb on + strand at 660.264 kb on - strand, within BPHYT_RS02970 at 660.337 kb on + strand, within BPHYT_RS02970 at 660.338 kb on - strand, within BPHYT_RS02970 at 660.431 kb on + strand, within BPHYT_RS02970 at 660.431 kb on + strand, within BPHYT_RS02970 at 660.431 kb on + strand, within BPHYT_RS02970 at 660.431 kb on + strand, within BPHYT_RS02970 at 660.432 kb on - strand, within BPHYT_RS02970 at 660.575 kb on + strand, within BPHYT_RS02970
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6 vol% remove 657,799 + BPHYT_RS02960 0.52 -0.4 657,799 + BPHYT_RS02960 0.52 +0.2 657,799 + BPHYT_RS02960 0.52 -0.3 657,800 - BPHYT_RS02960 0.52 -0.0 657,800 - BPHYT_RS02960 0.52 +0.4 657,800 - BPHYT_RS02960 0.52 +0.1 657,800 - BPHYT_RS02960 0.52 +0.0 657,801 + BPHYT_RS02960 0.52 +0.2 657,978 + BPHYT_RS02960 0.66 -1.4 658,142 - BPHYT_RS02960 0.80 +0.3 658,142 - BPHYT_RS02960 0.80 -0.3 658,170 + BPHYT_RS02960 0.82 +0.1 658,171 - BPHYT_RS02960 0.82 +0.2 658,171 - BPHYT_RS02960 0.82 -0.1 658,610 + -2.1 658,613 - -1.6 659,066 + BPHYT_RS02965 0.45 -2.0 659,066 + BPHYT_RS02965 0.45 -1.7 659,067 - BPHYT_RS02965 0.45 -0.7 659,540 + BPHYT_RS02965 0.89 -1.0 659,543 - BPHYT_RS02965 0.89 -1.2 659,614 - -0.6 659,666 - -0.0 659,666 - +0.0 659,696 - +0.1 659,700 - +0.4 659,892 + +0.1 659,895 + -0.0 659,895 + -1.0 659,896 - -0.9 659,977 + -0.5 659,977 + -0.1 659,977 + +0.4 659,977 + -1.2 659,977 + +0.1 659,977 + -0.0 659,977 + -0.1 659,978 - -0.6 659,981 + +0.1 659,981 + -0.1 659,981 + +0.0 659,981 + +0.1 659,981 + +0.0 659,981 + -0.5 659,981 + -0.1 659,982 - -0.5 659,982 - +0.0 659,982 - -3.9 659,983 + +0.6 659,983 + +0.1 660,022 + BPHYT_RS02970 0.11 -0.2 660,022 + BPHYT_RS02970 0.11 +0.0 660,022 + BPHYT_RS02970 0.11 +0.1 660,022 + BPHYT_RS02970 0.11 -0.2 660,084 - BPHYT_RS02970 0.13 -0.6 660,152 + BPHYT_RS02970 0.16 +1.0 660,152 + BPHYT_RS02970 0.16 -0.2 660,203 + BPHYT_RS02970 0.18 +0.2 660,204 - BPHYT_RS02970 0.18 +0.1 660,230 + BPHYT_RS02970 0.19 -0.2 660,263 + BPHYT_RS02970 0.20 +0.0 660,263 + BPHYT_RS02970 0.20 -0.1 660,263 + +0.6 660,264 - BPHYT_RS02970 0.20 -0.3 660,337 + BPHYT_RS02970 0.22 -0.0 660,338 - BPHYT_RS02970 0.22 -0.2 660,431 + BPHYT_RS02970 0.26 +0.4 660,431 + BPHYT_RS02970 0.26 -0.2 660,431 + BPHYT_RS02970 0.26 +0.3 660,431 + BPHYT_RS02970 0.26 +0.6 660,432 - BPHYT_RS02970 0.26 +0.2 660,575 + BPHYT_RS02970 0.31 -0.3
Or see this region's nucleotide sequence