Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09930

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09920 and ABZR87_RS09925 are separated by 140 nucleotidesABZR87_RS09925 and ABZR87_RS09930 are separated by 77 nucleotidesABZR87_RS09930 and ABZR87_RS09935 are separated by 205 nucleotides ABZR87_RS09920: ABZR87_RS09920 - electron transport complex subunit RsxB, at 2,105,979 to 2,106,809 _RS09920 ABZR87_RS09925: ABZR87_RS09925 - TetR/AcrR family transcriptional regulator, at 2,106,950 to 2,107,645 _RS09925 ABZR87_RS09930: ABZR87_RS09930 - polyhydroxyalkanoate depolymerase, at 2,107,723 to 2,108,994 _RS09930 ABZR87_RS09935: ABZR87_RS09935 - amino acid aminotransferase, at 2,109,200 to 2,110,396 _RS09935 Position (kb) 2107 2108 2109Strain fitness (log2 ratio) -3 -2 -1 0 1at 2106.830 kb on + strandat 2106.831 kb on - strandat 2106.906 kb on - strandat 2106.911 kb on + strandat 2106.911 kb on + strandat 2106.911 kb on + strandat 2106.912 kb on - strandat 2106.912 kb on - strandat 2106.912 kb on - strandat 2106.912 kb on - strandat 2106.918 kb on + strandat 2106.932 kb on + strandat 2106.932 kb on + strandat 2106.932 kb on + strandat 2106.932 kb on + strandat 2106.933 kb on - strandat 2107.154 kb on + strand, within ABZR87_RS09925at 2107.154 kb on + strand, within ABZR87_RS09925at 2107.154 kb on + strand, within ABZR87_RS09925at 2107.154 kb on + strand, within ABZR87_RS09925at 2107.154 kb on + strand, within ABZR87_RS09925at 2107.154 kb on + strand, within ABZR87_RS09925at 2107.154 kb on + strand, within ABZR87_RS09925at 2107.155 kb on - strand, within ABZR87_RS09925at 2107.155 kb on - strand, within ABZR87_RS09925at 2107.155 kb on - strand, within ABZR87_RS09925at 2107.155 kb on - strand, within ABZR87_RS09925at 2107.155 kb on - strand, within ABZR87_RS09925at 2107.155 kb on - strand, within ABZR87_RS09925at 2107.155 kb on - strand, within ABZR87_RS09925at 2107.157 kb on + strand, within ABZR87_RS09925at 2107.157 kb on + strand, within ABZR87_RS09925at 2107.157 kb on + strand, within ABZR87_RS09925at 2107.158 kb on - strand, within ABZR87_RS09925at 2107.161 kb on - strand, within ABZR87_RS09925at 2107.161 kb on - strand, within ABZR87_RS09925at 2107.161 kb on - strand, within ABZR87_RS09925at 2107.163 kb on + strand, within ABZR87_RS09925at 2107.164 kb on - strand, within ABZR87_RS09925at 2107.208 kb on + strand, within ABZR87_RS09925at 2107.208 kb on + strand, within ABZR87_RS09925at 2107.208 kb on + strand, within ABZR87_RS09925at 2107.208 kb on + strand, within ABZR87_RS09925at 2107.208 kb on + strand, within ABZR87_RS09925at 2107.208 kb on + strand, within ABZR87_RS09925at 2107.208 kb on + strand, within ABZR87_RS09925at 2107.209 kb on - strand, within ABZR87_RS09925at 2107.209 kb on - strand, within ABZR87_RS09925at 2107.209 kb on - strand, within ABZR87_RS09925at 2107.304 kb on + strand, within ABZR87_RS09925at 2107.305 kb on - strand, within ABZR87_RS09925at 2107.308 kb on - strand, within ABZR87_RS09925at 2107.417 kb on - strand, within ABZR87_RS09925at 2107.514 kb on + strand, within ABZR87_RS09925at 2107.514 kb on + strand, within ABZR87_RS09925at 2107.515 kb on - strand, within ABZR87_RS09925at 2107.515 kb on - strand, within ABZR87_RS09925at 2107.515 kb on - strand, within ABZR87_RS09925at 2107.515 kb on - strand, within ABZR87_RS09925at 2107.532 kb on + strand, within ABZR87_RS09925at 2107.551 kb on + strand, within ABZR87_RS09925at 2107.603 kb on + strandat 2107.604 kb on - strandat 2107.623 kb on - strandat 2107.724 kb on + strandat 2107.725 kb on - strandat 2107.790 kb on + strandat 2107.830 kb on - strandat 2108.010 kb on + strand, within ABZR87_RS09930at 2108.011 kb on - strand, within ABZR87_RS09930at 2108.011 kb on - strand, within ABZR87_RS09930at 2108.011 kb on - strand, within ABZR87_RS09930at 2108.011 kb on - strand, within ABZR87_RS09930at 2108.011 kb on - strand, within ABZR87_RS09930at 2108.060 kb on + strand, within ABZR87_RS09930at 2108.060 kb on + strand, within ABZR87_RS09930at 2108.061 kb on - strand, within ABZR87_RS09930at 2108.061 kb on - strand, within ABZR87_RS09930at 2108.061 kb on - strand, within ABZR87_RS09930at 2108.063 kb on + strand, within ABZR87_RS09930at 2108.063 kb on + strand, within ABZR87_RS09930at 2108.093 kb on + strand, within ABZR87_RS09930at 2108.093 kb on + strand, within ABZR87_RS09930at 2108.093 kb on + strand, within ABZR87_RS09930at 2108.094 kb on - strand, within ABZR87_RS09930at 2108.156 kb on + strand, within ABZR87_RS09930at 2108.157 kb on - strand, within ABZR87_RS09930at 2108.159 kb on + strand, within ABZR87_RS09930at 2108.160 kb on - strand, within ABZR87_RS09930at 2108.160 kb on - strand, within ABZR87_RS09930at 2108.160 kb on - strand, within ABZR87_RS09930at 2108.160 kb on - strand, within ABZR87_RS09930at 2108.165 kb on + strand, within ABZR87_RS09930at 2108.166 kb on - strand, within ABZR87_RS09930at 2108.166 kb on - strand, within ABZR87_RS09930at 2108.256 kb on - strand, within ABZR87_RS09930at 2108.273 kb on + strand, within ABZR87_RS09930at 2108.273 kb on + strand, within ABZR87_RS09930at 2108.483 kb on + strand, within ABZR87_RS09930at 2108.483 kb on + strand, within ABZR87_RS09930at 2108.483 kb on + strand, within ABZR87_RS09930at 2108.484 kb on - strand, within ABZR87_RS09930at 2108.484 kb on - strand, within ABZR87_RS09930at 2108.484 kb on - strand, within ABZR87_RS09930at 2108.484 kb on - strand, within ABZR87_RS09930at 2108.484 kb on - strand, within ABZR87_RS09930at 2108.484 kb on - strand, within ABZR87_RS09930at 2108.504 kb on + strand, within ABZR87_RS09930at 2108.504 kb on + strand, within ABZR87_RS09930at 2108.504 kb on + strand, within ABZR87_RS09930at 2108.505 kb on - strand, within ABZR87_RS09930at 2108.505 kb on - strand, within ABZR87_RS09930at 2108.505 kb on - strand, within ABZR87_RS09930at 2108.505 kb on - strand, within ABZR87_RS09930at 2108.505 kb on - strand, within ABZR87_RS09930at 2108.514 kb on - strand, within ABZR87_RS09930at 2108.514 kb on - strand, within ABZR87_RS09930at 2108.514 kb on - strand, within ABZR87_RS09930at 2108.514 kb on - strand, within ABZR87_RS09930at 2108.579 kb on + strand, within ABZR87_RS09930at 2108.579 kb on + strand, within ABZR87_RS09930at 2108.579 kb on + strand, within ABZR87_RS09930at 2108.580 kb on - strand, within ABZR87_RS09930at 2108.711 kb on + strand, within ABZR87_RS09930at 2108.712 kb on - strand, within ABZR87_RS09930at 2108.825 kb on + strand, within ABZR87_RS09930at 2108.825 kb on + strand, within ABZR87_RS09930at 2108.825 kb on + strand, within ABZR87_RS09930at 2108.826 kb on - strand, within ABZR87_RS09930at 2108.843 kb on + strand, within ABZR87_RS09930at 2108.855 kb on + strand, within ABZR87_RS09930at 2108.856 kb on - strand, within ABZR87_RS09930at 2108.867 kb on + strandat 2108.867 kb on + strandat 2108.868 kb on - strandat 2108.987 kb on + strandat 2108.988 kb on - strandat 2108.988 kb on - strandat 2109.035 kb on + strandat 2109.035 kb on + strandat 2109.036 kb on - strandat 2109.069 kb on + strandat 2109.101 kb on + strandat 2109.101 kb on + strandat 2109.101 kb on + strandat 2109.101 kb on + strandat 2109.101 kb on + strandat 2109.101 kb on + strandat 2109.101 kb on + strandat 2109.101 kb on + strandat 2109.102 kb on - strandat 2109.102 kb on - strandat 2109.102 kb on - strandat 2109.102 kb on - strandat 2109.102 kb on - strandat 2109.102 kb on - strandat 2109.102 kb on - strandat 2109.102 kb on - strandat 2109.102 kb on - strandat 2109.122 kb on + strandat 2109.122 kb on + strandat 2109.122 kb on + strandat 2109.192 kb on - strandat 2109.201 kb on + strandat 2109.247 kb on + strandat 2109.248 kb on - strandat 2109.248 kb on - strandat 2109.288 kb on + strandat 2109.289 kb on - strandat 2109.342 kb on + strand, within ABZR87_RS09935at 2109.885 kb on + strand, within ABZR87_RS09935at 2109.886 kb on - strand, within ABZR87_RS09935at 2109.942 kb on + strand, within ABZR87_RS09935at 2109.942 kb on + strand, within ABZR87_RS09935at 2109.943 kb on - strand, within ABZR87_RS09935at 2109.945 kb on + strand, within ABZR87_RS09935at 2109.945 kb on + strand, within ABZR87_RS09935at 2109.951 kb on + strand, within ABZR87_RS09935at 2109.951 kb on + strand, within ABZR87_RS09935at 2109.951 kb on + strand, within ABZR87_RS09935at 2109.951 kb on + strand, within ABZR87_RS09935at 2109.951 kb on + strand, within ABZR87_RS09935at 2109.951 kb on + strand, within ABZR87_RS09935at 2109.952 kb on - strand, within ABZR87_RS09935at 2109.952 kb on - strand, within ABZR87_RS09935at 2109.952 kb on - strand, within ABZR87_RS09935at 2109.952 kb on - strand, within ABZR87_RS09935at 2109.952 kb on - strand, within ABZR87_RS09935

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,106,830 + +0.0
2,106,831 - +0.8
2,106,906 - +0.9
2,106,911 + -0.1
2,106,911 + -0.1
2,106,911 + -0.6
2,106,912 - +0.1
2,106,912 - -0.6
2,106,912 - -0.3
2,106,912 - -0.8
2,106,918 + +0.5
2,106,932 + -0.2
2,106,932 + -1.0
2,106,932 + -0.2
2,106,932 + -0.1
2,106,933 - -0.4
2,107,154 + ABZR87_RS09925 0.29 -0.1
2,107,154 + ABZR87_RS09925 0.29 +1.0
2,107,154 + ABZR87_RS09925 0.29 +0.3
2,107,154 + ABZR87_RS09925 0.29 +1.5
2,107,154 + ABZR87_RS09925 0.29 +0.1
2,107,154 + ABZR87_RS09925 0.29 +0.3
2,107,154 + ABZR87_RS09925 0.29 +0.2
2,107,155 - ABZR87_RS09925 0.29 -0.7
2,107,155 - ABZR87_RS09925 0.29 +0.0
2,107,155 - ABZR87_RS09925 0.29 -0.2
2,107,155 - ABZR87_RS09925 0.29 -0.4
2,107,155 - ABZR87_RS09925 0.29 +0.1
2,107,155 - ABZR87_RS09925 0.29 +0.3
2,107,155 - ABZR87_RS09925 0.29 +0.4
2,107,157 + ABZR87_RS09925 0.30 +0.4
2,107,157 + ABZR87_RS09925 0.30 -0.3
2,107,157 + ABZR87_RS09925 0.30 +0.8
2,107,158 - ABZR87_RS09925 0.30 +0.3
2,107,161 - ABZR87_RS09925 0.30 +0.3
2,107,161 - ABZR87_RS09925 0.30 +0.4
2,107,161 - ABZR87_RS09925 0.30 +0.8
2,107,163 + ABZR87_RS09925 0.31 +0.5
2,107,164 - ABZR87_RS09925 0.31 -2.3
2,107,208 + ABZR87_RS09925 0.37 +0.3
2,107,208 + ABZR87_RS09925 0.37 -0.8
2,107,208 + ABZR87_RS09925 0.37 -0.6
2,107,208 + ABZR87_RS09925 0.37 +1.2
2,107,208 + ABZR87_RS09925 0.37 -0.3
2,107,208 + ABZR87_RS09925 0.37 -0.7
2,107,208 + ABZR87_RS09925 0.37 +1.3
2,107,209 - ABZR87_RS09925 0.37 -0.1
2,107,209 - ABZR87_RS09925 0.37 +0.5
2,107,209 - ABZR87_RS09925 0.37 +1.0
2,107,304 + ABZR87_RS09925 0.51 -0.4
2,107,305 - ABZR87_RS09925 0.51 +0.8
2,107,308 - ABZR87_RS09925 0.51 +0.6
2,107,417 - ABZR87_RS09925 0.67 -0.2
2,107,514 + ABZR87_RS09925 0.81 +1.4
2,107,514 + ABZR87_RS09925 0.81 +0.9
2,107,515 - ABZR87_RS09925 0.81 -0.3
2,107,515 - ABZR87_RS09925 0.81 -0.1
2,107,515 - ABZR87_RS09925 0.81 +0.2
2,107,515 - ABZR87_RS09925 0.81 -1.0
2,107,532 + ABZR87_RS09925 0.84 +0.2
2,107,551 + ABZR87_RS09925 0.86 +0.8
2,107,603 + +0.3
2,107,604 - -0.8
2,107,623 - -0.1
2,107,724 + +0.0
2,107,725 - +0.5
2,107,790 + -0.3
2,107,830 - -0.8
2,108,010 + ABZR87_RS09930 0.23 +0.8
2,108,011 - ABZR87_RS09930 0.23 -0.6
2,108,011 - ABZR87_RS09930 0.23 -0.6
2,108,011 - ABZR87_RS09930 0.23 -0.6
2,108,011 - ABZR87_RS09930 0.23 +0.7
2,108,011 - ABZR87_RS09930 0.23 -0.4
2,108,060 + ABZR87_RS09930 0.26 -0.5
2,108,060 + ABZR87_RS09930 0.26 -0.3
2,108,061 - ABZR87_RS09930 0.27 +0.2
2,108,061 - ABZR87_RS09930 0.27 +0.1
2,108,061 - ABZR87_RS09930 0.27 -0.1
2,108,063 + ABZR87_RS09930 0.27 -0.6
2,108,063 + ABZR87_RS09930 0.27 -0.6
2,108,093 + ABZR87_RS09930 0.29 -0.2
2,108,093 + ABZR87_RS09930 0.29 -0.8
2,108,093 + ABZR87_RS09930 0.29 +0.1
2,108,094 - ABZR87_RS09930 0.29 -0.7
2,108,156 + ABZR87_RS09930 0.34 -0.3
2,108,157 - ABZR87_RS09930 0.34 +0.2
2,108,159 + ABZR87_RS09930 0.34 -1.0
2,108,160 - ABZR87_RS09930 0.34 -0.5
2,108,160 - ABZR87_RS09930 0.34 +0.3
2,108,160 - ABZR87_RS09930 0.34 -0.1
2,108,160 - ABZR87_RS09930 0.34 +0.1
2,108,165 + ABZR87_RS09930 0.35 -0.1
2,108,166 - ABZR87_RS09930 0.35 -0.3
2,108,166 - ABZR87_RS09930 0.35 -0.4
2,108,256 - ABZR87_RS09930 0.42 +0.0
2,108,273 + ABZR87_RS09930 0.43 -0.1
2,108,273 + ABZR87_RS09930 0.43 -1.0
2,108,483 + ABZR87_RS09930 0.60 -2.2
2,108,483 + ABZR87_RS09930 0.60 -1.9
2,108,483 + ABZR87_RS09930 0.60 -1.2
2,108,484 - ABZR87_RS09930 0.60 +0.1
2,108,484 - ABZR87_RS09930 0.60 -0.6
2,108,484 - ABZR87_RS09930 0.60 +0.5
2,108,484 - ABZR87_RS09930 0.60 +0.8
2,108,484 - ABZR87_RS09930 0.60 -0.3
2,108,484 - ABZR87_RS09930 0.60 -0.1
2,108,504 + ABZR87_RS09930 0.61 +0.6
2,108,504 + ABZR87_RS09930 0.61 +0.8
2,108,504 + ABZR87_RS09930 0.61 -0.4
2,108,505 - ABZR87_RS09930 0.61 +0.3
2,108,505 - ABZR87_RS09930 0.61 +0.8
2,108,505 - ABZR87_RS09930 0.61 -0.2
2,108,505 - ABZR87_RS09930 0.61 +0.5
2,108,505 - ABZR87_RS09930 0.61 +0.3
2,108,514 - ABZR87_RS09930 0.62 +0.6
2,108,514 - ABZR87_RS09930 0.62 -0.8
2,108,514 - ABZR87_RS09930 0.62 -0.4
2,108,514 - ABZR87_RS09930 0.62 +0.0
2,108,579 + ABZR87_RS09930 0.67 -0.8
2,108,579 + ABZR87_RS09930 0.67 -1.1
2,108,579 + ABZR87_RS09930 0.67 -1.6
2,108,580 - ABZR87_RS09930 0.67 -0.6
2,108,711 + ABZR87_RS09930 0.78 +0.3
2,108,712 - ABZR87_RS09930 0.78 +0.2
2,108,825 + ABZR87_RS09930 0.87 +0.1
2,108,825 + ABZR87_RS09930 0.87 +0.1
2,108,825 + ABZR87_RS09930 0.87 -0.6
2,108,826 - ABZR87_RS09930 0.87 -0.0
2,108,843 + ABZR87_RS09930 0.88 +0.5
2,108,855 + ABZR87_RS09930 0.89 -0.5
2,108,856 - ABZR87_RS09930 0.89 +0.3
2,108,867 + +0.5
2,108,867 + +0.4
2,108,868 - -0.3
2,108,987 + +0.0
2,108,988 - +0.2
2,108,988 - -0.2
2,109,035 + +0.3
2,109,035 + +0.2
2,109,036 - +0.3
2,109,069 + +0.6
2,109,101 + -0.2
2,109,101 + +0.0
2,109,101 + +0.2
2,109,101 + -1.0
2,109,101 + +0.3
2,109,101 + -0.3
2,109,101 + +0.4
2,109,101 + +0.6
2,109,102 - -0.2
2,109,102 - -0.2
2,109,102 - +0.2
2,109,102 - +0.9
2,109,102 - -0.4
2,109,102 - +0.9
2,109,102 - -0.2
2,109,102 - +0.6
2,109,102 - -0.3
2,109,122 + +0.4
2,109,122 + -0.0
2,109,122 + +0.2
2,109,192 - -0.8
2,109,201 + +0.6
2,109,247 + -2.0
2,109,248 - -1.9
2,109,248 - -2.7
2,109,288 + -2.7
2,109,289 - -1.7
2,109,342 + ABZR87_RS09935 0.12 -1.5
2,109,885 + ABZR87_RS09935 0.57 -2.6
2,109,886 - ABZR87_RS09935 0.57 -2.4
2,109,942 + ABZR87_RS09935 0.62 -2.3
2,109,942 + ABZR87_RS09935 0.62 -3.4
2,109,943 - ABZR87_RS09935 0.62 -1.5
2,109,945 + ABZR87_RS09935 0.62 -1.4
2,109,945 + ABZR87_RS09935 0.62 -1.8
2,109,951 + ABZR87_RS09935 0.63 -2.4
2,109,951 + ABZR87_RS09935 0.63 -2.0
2,109,951 + ABZR87_RS09935 0.63 -2.7
2,109,951 + ABZR87_RS09935 0.63 -0.5
2,109,951 + ABZR87_RS09935 0.63 -2.8
2,109,951 + ABZR87_RS09935 0.63 -3.5
2,109,952 - ABZR87_RS09935 0.63 -1.7
2,109,952 - ABZR87_RS09935 0.63 -1.4
2,109,952 - ABZR87_RS09935 0.63 -1.6
2,109,952 - ABZR87_RS09935 0.63 -2.4
2,109,952 - ABZR87_RS09935 0.63 -1.4

Or see this region's nucleotide sequence