Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03035

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS03030 and ABZR87_RS03035 overlap by 4 nucleotidesABZR87_RS03035 and ABZR87_RS03040 overlap by 8 nucleotidesABZR87_RS03040 and ABZR87_RS03045 are separated by 22 nucleotides ABZR87_RS03030: ABZR87_RS03030 - ABC transporter ATP-binding protein, at 635,926 to 637,023 _RS03030 ABZR87_RS03035: ABZR87_RS03035 - sugar ABC transporter permease, at 637,020 to 637,910 _RS03035 ABZR87_RS03040: ABZR87_RS03040 - carbohydrate ABC transporter permease, at 637,903 to 638,736 _RS03040 ABZR87_RS03045: ABZR87_RS03045 - DUF2160 domain-containing protein, at 638,759 to 639,040 _RS03045 Position (kb) 637 638Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 636.037 kb on + strand, within ABZR87_RS03030at 636.037 kb on + strand, within ABZR87_RS03030at 636.037 kb on + strand, within ABZR87_RS03030at 636.038 kb on - strand, within ABZR87_RS03030at 636.038 kb on - strand, within ABZR87_RS03030at 636.038 kb on - strand, within ABZR87_RS03030at 636.038 kb on - strand, within ABZR87_RS03030at 636.202 kb on + strand, within ABZR87_RS03030at 636.202 kb on + strand, within ABZR87_RS03030at 636.203 kb on - strand, within ABZR87_RS03030at 636.203 kb on - strand, within ABZR87_RS03030at 636.203 kb on - strand, within ABZR87_RS03030at 636.203 kb on - strand, within ABZR87_RS03030at 636.511 kb on + strand, within ABZR87_RS03030at 636.511 kb on + strand, within ABZR87_RS03030at 636.511 kb on + strand, within ABZR87_RS03030at 636.511 kb on + strand, within ABZR87_RS03030at 636.512 kb on - strand, within ABZR87_RS03030at 636.512 kb on - strand, within ABZR87_RS03030at 636.512 kb on - strand, within ABZR87_RS03030at 636.512 kb on - strand, within ABZR87_RS03030at 636.512 kb on - strand, within ABZR87_RS03030at 636.512 kb on - strand, within ABZR87_RS03030at 636.512 kb on - strand, within ABZR87_RS03030at 636.627 kb on + strand, within ABZR87_RS03030at 636.627 kb on + strand, within ABZR87_RS03030at 636.627 kb on + strand, within ABZR87_RS03030at 636.627 kb on + strand, within ABZR87_RS03030at 636.627 kb on + strand, within ABZR87_RS03030at 636.628 kb on - strand, within ABZR87_RS03030at 636.640 kb on + strand, within ABZR87_RS03030at 636.991 kb on + strandat 636.991 kb on + strandat 636.991 kb on + strandat 636.991 kb on + strandat 636.991 kb on + strandat 636.992 kb on - strandat 636.992 kb on - strandat 636.992 kb on - strandat 636.994 kb on + strandat 636.994 kb on + strandat 636.994 kb on + strandat 636.995 kb on - strandat 636.995 kb on - strandat 636.995 kb on - strandat 636.995 kb on - strandat 637.119 kb on + strand, within ABZR87_RS03035at 637.120 kb on - strand, within ABZR87_RS03035at 637.120 kb on - strand, within ABZR87_RS03035at 637.443 kb on + strand, within ABZR87_RS03035at 637.443 kb on + strand, within ABZR87_RS03035at 637.444 kb on - strand, within ABZR87_RS03035at 637.444 kb on - strand, within ABZR87_RS03035at 637.444 kb on - strand, within ABZR87_RS03035at 637.449 kb on + strand, within ABZR87_RS03035at 637.449 kb on + strand, within ABZR87_RS03035at 637.449 kb on + strand, within ABZR87_RS03035at 637.450 kb on - strand, within ABZR87_RS03035at 637.450 kb on - strand, within ABZR87_RS03035at 637.450 kb on - strand, within ABZR87_RS03035at 637.450 kb on - strand, within ABZR87_RS03035at 637.450 kb on - strand, within ABZR87_RS03035at 637.533 kb on + strand, within ABZR87_RS03035at 637.533 kb on + strand, within ABZR87_RS03035at 637.534 kb on - strand, within ABZR87_RS03035at 637.534 kb on - strand, within ABZR87_RS03035at 637.566 kb on + strand, within ABZR87_RS03035at 637.566 kb on + strand, within ABZR87_RS03035at 637.567 kb on - strand, within ABZR87_RS03035at 637.567 kb on - strand, within ABZR87_RS03035at 637.614 kb on + strand, within ABZR87_RS03035at 637.615 kb on - strand, within ABZR87_RS03035at 637.615 kb on - strand, within ABZR87_RS03035at 637.615 kb on - strand, within ABZR87_RS03035at 637.615 kb on - strand, within ABZR87_RS03035at 637.689 kb on + strand, within ABZR87_RS03035at 637.689 kb on + strand, within ABZR87_RS03035at 637.689 kb on + strand, within ABZR87_RS03035at 637.690 kb on - strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.816 kb on - strand, within ABZR87_RS03035at 637.816 kb on - strand, within ABZR87_RS03035at 637.851 kb on + strandat 637.851 kb on + strandat 637.852 kb on - strandat 637.908 kb on + strandat 637.908 kb on + strandat 637.909 kb on - strandat 637.969 kb on + strandat 637.969 kb on + strandat 637.969 kb on + strandat 637.969 kb on + strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.996 kb on + strand, within ABZR87_RS03040at 637.997 kb on - strand, within ABZR87_RS03040at 637.997 kb on - strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.113 kb on + strand, within ABZR87_RS03040at 638.122 kb on + strand, within ABZR87_RS03040at 638.123 kb on - strand, within ABZR87_RS03040at 638.123 kb on - strand, within ABZR87_RS03040at 638.123 kb on - strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.191 kb on + strand, within ABZR87_RS03040at 638.207 kb on - strand, within ABZR87_RS03040at 638.300 kb on - strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.444 kb on - strand, within ABZR87_RS03040at 638.444 kb on - strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.701 kb on + strandat 638.701 kb on + strandat 638.702 kb on - strandat 638.702 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
636,037 + ABZR87_RS03030 0.10 -1.6
636,037 + ABZR87_RS03030 0.10 -0.5
636,037 + ABZR87_RS03030 0.10 -3.2
636,038 - ABZR87_RS03030 0.10 -3.8
636,038 - ABZR87_RS03030 0.10 -3.4
636,038 - ABZR87_RS03030 0.10 -2.3
636,038 - ABZR87_RS03030 0.10 -1.9
636,202 + ABZR87_RS03030 0.25 -1.6
636,202 + ABZR87_RS03030 0.25 +0.1
636,203 - ABZR87_RS03030 0.25 -3.4
636,203 - ABZR87_RS03030 0.25 -2.0
636,203 - ABZR87_RS03030 0.25 -1.3
636,203 - ABZR87_RS03030 0.25 -0.3
636,511 + ABZR87_RS03030 0.53 -0.5
636,511 + ABZR87_RS03030 0.53 -0.2
636,511 + ABZR87_RS03030 0.53 +0.8
636,511 + ABZR87_RS03030 0.53 +0.4
636,512 - ABZR87_RS03030 0.53 -2.2
636,512 - ABZR87_RS03030 0.53 -3.9
636,512 - ABZR87_RS03030 0.53 -2.8
636,512 - ABZR87_RS03030 0.53 -4.8
636,512 - ABZR87_RS03030 0.53 -4.5
636,512 - ABZR87_RS03030 0.53 -2.6
636,512 - ABZR87_RS03030 0.53 -3.3
636,627 + ABZR87_RS03030 0.64 +1.0
636,627 + ABZR87_RS03030 0.64 -0.3
636,627 + ABZR87_RS03030 0.64 +0.0
636,627 + ABZR87_RS03030 0.64 +0.8
636,627 + ABZR87_RS03030 0.64 -0.9
636,628 - ABZR87_RS03030 0.64 -1.2
636,640 + ABZR87_RS03030 0.65 -0.1
636,991 + -0.3
636,991 + +0.6
636,991 + +0.0
636,991 + +0.8
636,991 + +0.6
636,992 - -1.0
636,992 - -1.6
636,992 - -3.0
636,994 + +0.1
636,994 + +1.1
636,994 + +0.2
636,995 - -3.6
636,995 - -3.0
636,995 - -3.4
636,995 - -3.3
637,119 + ABZR87_RS03035 0.11 -1.7
637,120 - ABZR87_RS03035 0.11 -4.4
637,120 - ABZR87_RS03035 0.11 -4.6
637,443 + ABZR87_RS03035 0.47 -3.3
637,443 + ABZR87_RS03035 0.47 -2.1
637,444 - ABZR87_RS03035 0.48 -6.5
637,444 - ABZR87_RS03035 0.48 -4.3
637,444 - ABZR87_RS03035 0.48 -3.3
637,449 + ABZR87_RS03035 0.48 -0.8
637,449 + ABZR87_RS03035 0.48 -0.8
637,449 + ABZR87_RS03035 0.48 -1.3
637,450 - ABZR87_RS03035 0.48 -2.4
637,450 - ABZR87_RS03035 0.48 -4.1
637,450 - ABZR87_RS03035 0.48 -4.9
637,450 - ABZR87_RS03035 0.48 -2.8
637,450 - ABZR87_RS03035 0.48 -1.9
637,533 + ABZR87_RS03035 0.58 -1.6
637,533 + ABZR87_RS03035 0.58 -0.8
637,534 - ABZR87_RS03035 0.58 -3.2
637,534 - ABZR87_RS03035 0.58 -3.0
637,566 + ABZR87_RS03035 0.61 -2.7
637,566 + ABZR87_RS03035 0.61 -1.8
637,567 - ABZR87_RS03035 0.61 -3.0
637,567 - ABZR87_RS03035 0.61 -3.7
637,614 + ABZR87_RS03035 0.67 -0.3
637,615 - ABZR87_RS03035 0.67 -2.5
637,615 - ABZR87_RS03035 0.67 -4.4
637,615 - ABZR87_RS03035 0.67 -1.6
637,615 - ABZR87_RS03035 0.67 -4.7
637,689 + ABZR87_RS03035 0.75 -0.9
637,689 + ABZR87_RS03035 0.75 -0.2
637,689 + ABZR87_RS03035 0.75 +0.8
637,690 - ABZR87_RS03035 0.75 -3.0
637,815 + ABZR87_RS03035 0.89 +0.2
637,815 + ABZR87_RS03035 0.89 +0.5
637,815 + ABZR87_RS03035 0.89 -0.7
637,815 + ABZR87_RS03035 0.89 +0.7
637,815 + ABZR87_RS03035 0.89 -0.1
637,816 - ABZR87_RS03035 0.89 -2.7
637,816 - ABZR87_RS03035 0.89 -0.7
637,851 + +1.4
637,851 + +0.4
637,852 - -1.3
637,908 + -3.1
637,908 + -0.6
637,909 - -0.6
637,969 + -3.2
637,969 + -0.7
637,969 + -0.8
637,969 + -0.9
637,970 - -4.8
637,970 - -3.0
637,970 - -3.9
637,970 - -2.5
637,970 - +1.0
637,970 - -3.0
637,996 + ABZR87_RS03040 0.11 -3.1
637,997 - ABZR87_RS03040 0.11 -2.8
637,997 - ABZR87_RS03040 0.11 -3.4
638,083 + ABZR87_RS03040 0.22 -1.6
638,083 + ABZR87_RS03040 0.22 -2.7
638,083 + ABZR87_RS03040 0.22 -0.8
638,083 + ABZR87_RS03040 0.22 -2.5
638,084 - ABZR87_RS03040 0.22 -3.3
638,084 - ABZR87_RS03040 0.22 -2.2
638,084 - ABZR87_RS03040 0.22 -3.2
638,084 - ABZR87_RS03040 0.22 -2.6
638,084 - ABZR87_RS03040 0.22 -3.9
638,084 - ABZR87_RS03040 0.22 -5.8
638,113 + ABZR87_RS03040 0.25 -3.0
638,122 + ABZR87_RS03040 0.26 -0.1
638,123 - ABZR87_RS03040 0.26 -3.8
638,123 - ABZR87_RS03040 0.26 -1.2
638,123 - ABZR87_RS03040 0.26 -1.5
638,140 + ABZR87_RS03040 0.28 -0.9
638,140 + ABZR87_RS03040 0.28 -2.9
638,140 + ABZR87_RS03040 0.28 +0.3
638,140 + ABZR87_RS03040 0.28 -1.4
638,140 + ABZR87_RS03040 0.28 -0.8
638,140 + ABZR87_RS03040 0.28 +0.0
638,140 + ABZR87_RS03040 0.28 -2.2
638,140 + ABZR87_RS03040 0.28 -0.7
638,140 + ABZR87_RS03040 0.28 -2.0
638,141 - ABZR87_RS03040 0.29 -2.9
638,141 - ABZR87_RS03040 0.29 -2.1
638,141 - ABZR87_RS03040 0.29 -2.6
638,141 - ABZR87_RS03040 0.29 -3.9
638,141 - ABZR87_RS03040 0.29 -3.7
638,141 - ABZR87_RS03040 0.29 -2.1
638,191 + ABZR87_RS03040 0.35 -0.8
638,207 - ABZR87_RS03040 0.36 -4.2
638,300 - ABZR87_RS03040 0.48 -3.4
638,431 + ABZR87_RS03040 0.63 -0.9
638,431 + ABZR87_RS03040 0.63 -0.6
638,431 + ABZR87_RS03040 0.63 +0.2
638,444 - ABZR87_RS03040 0.65 -3.9
638,444 - ABZR87_RS03040 0.65 -3.3
638,529 + ABZR87_RS03040 0.75 +1.5
638,529 + ABZR87_RS03040 0.75 +0.8
638,529 + ABZR87_RS03040 0.75 +0.6
638,530 - ABZR87_RS03040 0.75 -3.2
638,530 - ABZR87_RS03040 0.75 -2.2
638,530 - ABZR87_RS03040 0.75 -2.9
638,530 - ABZR87_RS03040 0.75 -2.9
638,701 + +0.9
638,701 + +0.9
638,702 - -3.6
638,702 - -0.5

Or see this region's nucleotide sequence