Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_629

Experiment: Vancomycin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_628 and Pf6N2E2_629 are separated by 92 nucleotidesPf6N2E2_629 and Pf6N2E2_630 overlap by 8 nucleotidesPf6N2E2_630 and Pf6N2E2_631 are separated by 63 nucleotides Pf6N2E2_628 - 2-ketogluconate transporter, at 715,226 to 716,524 _628 Pf6N2E2_629 - 2-ketogluconate kinase (EC 2.7.1.13), at 716,617 to 717,591 _629 Pf6N2E2_630 - Epimerase KguE, at 717,584 to 718,366 _630 Pf6N2E2_631 - 2-ketogluconate utilization repressor PtxS, at 718,430 to 719,455 _631 Position (kb) 716 717 718Strain fitness (log2 ratio) -2 -1 0 1 2at 715.695 kb on + strand, within Pf6N2E2_628at 715.854 kb on + strand, within Pf6N2E2_628at 716.149 kb on - strand, within Pf6N2E2_628at 716.149 kb on - strand, within Pf6N2E2_628at 716.149 kb on - strand, within Pf6N2E2_628at 716.310 kb on + strand, within Pf6N2E2_628at 716.430 kb on + strandat 716.430 kb on + strandat 716.460 kb on + strandat 716.460 kb on + strandat 716.460 kb on + strandat 716.487 kb on + strandat 716.487 kb on + strandat 716.487 kb on + strandat 716.487 kb on + strandat 716.488 kb on - strandat 716.888 kb on + strand, within Pf6N2E2_629at 716.889 kb on - strand, within Pf6N2E2_629at 716.889 kb on - strand, within Pf6N2E2_629at 717.272 kb on + strand, within Pf6N2E2_629at 717.272 kb on + strand, within Pf6N2E2_629at 717.272 kb on + strand, within Pf6N2E2_629at 717.698 kb on + strand, within Pf6N2E2_630at 717.699 kb on - strand, within Pf6N2E2_630at 717.813 kb on + strand, within Pf6N2E2_630at 717.813 kb on + strand, within Pf6N2E2_630at 717.813 kb on + strand, within Pf6N2E2_630at 717.814 kb on - strand, within Pf6N2E2_630at 717.814 kb on - strand, within Pf6N2E2_630at 718.071 kb on - strand, within Pf6N2E2_630at 718.370 kb on + strandat 718.370 kb on + strandat 718.370 kb on + strandat 718.370 kb on + strandat 718.370 kb on + strandat 718.371 kb on - strandat 718.371 kb on - strandat 718.373 kb on + strandat 718.373 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.12 mg/ml
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715,695 + Pf6N2E2_628 0.36 +0.8
715,854 + Pf6N2E2_628 0.48 -0.1
716,149 - Pf6N2E2_628 0.71 +0.6
716,149 - Pf6N2E2_628 0.71 -2.1
716,149 - Pf6N2E2_628 0.71 +1.3
716,310 + Pf6N2E2_628 0.83 +1.1
716,430 + +0.6
716,430 + +1.9
716,460 + -0.3
716,460 + -0.0
716,460 + +0.1
716,487 + +0.4
716,487 + +0.3
716,487 + +0.8
716,487 + +0.1
716,488 - -1.3
716,888 + Pf6N2E2_629 0.28 +0.3
716,889 - Pf6N2E2_629 0.28 -0.1
716,889 - Pf6N2E2_629 0.28 +1.2
717,272 + Pf6N2E2_629 0.67 +0.6
717,272 + Pf6N2E2_629 0.67 +0.7
717,272 + Pf6N2E2_629 0.67 +0.8
717,698 + Pf6N2E2_630 0.15 -0.5
717,699 - Pf6N2E2_630 0.15 -0.1
717,813 + Pf6N2E2_630 0.29 +0.6
717,813 + Pf6N2E2_630 0.29 +0.5
717,813 + Pf6N2E2_630 0.29 +0.6
717,814 - Pf6N2E2_630 0.29 +0.2
717,814 - Pf6N2E2_630 0.29 +0.4
718,071 - Pf6N2E2_630 0.62 +0.6
718,370 + +0.3
718,370 + -0.0
718,370 + +0.4
718,370 + -0.0
718,370 + +0.2
718,371 - +0.1
718,371 - +0.6
718,373 + -0.3
718,373 + +0.0

Or see this region's nucleotide sequence