Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_525

Experiment: Vancomycin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_524 and Pf6N2E2_525 are separated by 327 nucleotidesPf6N2E2_525 and Pf6N2E2_526 are separated by 171 nucleotides Pf6N2E2_524 - Inositol transport system permease protein, at 593,646 to 594,668 _524 Pf6N2E2_525 - C4-type zinc finger protein, DksA/TraR family, at 594,996 to 595,400 _525 Pf6N2E2_526 - Methyl-accepting chemotaxis protein, at 595,572 to 597,185 _526 Position (kb) 594 595 596Strain fitness (log2 ratio) -3 -2 -1 0 1at 594.080 kb on + strand, within Pf6N2E2_524at 594.141 kb on + strand, within Pf6N2E2_524at 594.141 kb on + strand, within Pf6N2E2_524at 594.141 kb on + strand, within Pf6N2E2_524at 594.141 kb on + strand, within Pf6N2E2_524at 594.141 kb on + strand, within Pf6N2E2_524at 594.142 kb on - strand, within Pf6N2E2_524at 594.142 kb on - strand, within Pf6N2E2_524at 594.180 kb on + strand, within Pf6N2E2_524at 594.180 kb on + strand, within Pf6N2E2_524at 594.180 kb on + strand, within Pf6N2E2_524at 594.181 kb on - strand, within Pf6N2E2_524at 594.245 kb on + strand, within Pf6N2E2_524at 594.268 kb on - strand, within Pf6N2E2_524at 594.276 kb on + strand, within Pf6N2E2_524at 594.276 kb on + strand, within Pf6N2E2_524at 594.276 kb on + strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.282 kb on + strand, within Pf6N2E2_524at 594.282 kb on + strand, within Pf6N2E2_524at 594.282 kb on + strand, within Pf6N2E2_524at 594.283 kb on - strand, within Pf6N2E2_524at 594.354 kb on + strand, within Pf6N2E2_524at 594.354 kb on + strand, within Pf6N2E2_524at 594.355 kb on - strand, within Pf6N2E2_524at 594.355 kb on - strand, within Pf6N2E2_524at 594.355 kb on - strand, within Pf6N2E2_524at 594.441 kb on + strand, within Pf6N2E2_524at 594.441 kb on + strand, within Pf6N2E2_524at 594.442 kb on - strand, within Pf6N2E2_524at 594.442 kb on - strand, within Pf6N2E2_524at 594.582 kb on + strandat 594.582 kb on + strandat 594.582 kb on + strandat 594.583 kb on - strandat 594.583 kb on - strandat 594.583 kb on - strandat 594.730 kb on + strandat 594.730 kb on + strandat 594.731 kb on - strandat 594.731 kb on - strandat 594.731 kb on - strandat 594.731 kb on - strandat 594.731 kb on - strandat 594.731 kb on - strandat 594.733 kb on + strandat 594.734 kb on - strandat 594.734 kb on - strandat 594.734 kb on - strandat 594.734 kb on - strandat 594.740 kb on - strandat 594.740 kb on - strandat 594.740 kb on - strandat 594.740 kb on - strandat 594.740 kb on - strandat 594.740 kb on - strandat 594.740 kb on - strandat 594.740 kb on - strandat 594.760 kb on - strandat 594.760 kb on - strandat 594.761 kb on + strandat 594.762 kb on - strandat 594.762 kb on - strandat 594.909 kb on - strandat 594.991 kb on + strandat 594.991 kb on + strandat 595.035 kb on + strandat 595.035 kb on + strandat 595.035 kb on + strandat 595.035 kb on + strandat 595.035 kb on + strandat 595.035 kb on + strandat 595.187 kb on + strand, within Pf6N2E2_525at 595.187 kb on + strand, within Pf6N2E2_525at 595.256 kb on + strand, within Pf6N2E2_525at 595.341 kb on + strand, within Pf6N2E2_525at 595.341 kb on + strand, within Pf6N2E2_525at 595.341 kb on + strand, within Pf6N2E2_525at 595.341 kb on + strand, within Pf6N2E2_525at 595.341 kb on + strand, within Pf6N2E2_525at 595.341 kb on + strand, within Pf6N2E2_525at 595.342 kb on - strand, within Pf6N2E2_525at 595.342 kb on - strand, within Pf6N2E2_525at 595.342 kb on - strand, within Pf6N2E2_525at 595.471 kb on + strandat 595.471 kb on + strandat 595.471 kb on + strandat 595.471 kb on + strandat 595.471 kb on + strandat 595.471 kb on + strandat 595.471 kb on + strandat 595.471 kb on + strandat 595.471 kb on + strandat 595.472 kb on - strandat 595.472 kb on - strandat 595.472 kb on - strandat 595.472 kb on - strandat 595.472 kb on - strandat 595.472 kb on - strandat 595.472 kb on - strandat 595.477 kb on + strandat 595.477 kb on + strandat 595.477 kb on + strandat 595.478 kb on - strandat 595.478 kb on - strandat 595.478 kb on - strandat 595.478 kb on - strandat 595.478 kb on - strandat 595.478 kb on - strandat 595.478 kb on - strandat 595.523 kb on - strandat 595.534 kb on - strandat 595.555 kb on - strandat 595.725 kb on + strandat 595.842 kb on + strand, within Pf6N2E2_526at 595.843 kb on - strand, within Pf6N2E2_526at 595.856 kb on + strand, within Pf6N2E2_526at 595.856 kb on + strand, within Pf6N2E2_526at 595.856 kb on + strand, within Pf6N2E2_526at 595.857 kb on - strand, within Pf6N2E2_526at 595.857 kb on - strand, within Pf6N2E2_526

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.12 mg/ml
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594,080 + Pf6N2E2_524 0.42 -1.3
594,141 + Pf6N2E2_524 0.48 +1.1
594,141 + Pf6N2E2_524 0.48 +0.1
594,141 + Pf6N2E2_524 0.48 -0.9
594,141 + Pf6N2E2_524 0.48 +0.5
594,141 + Pf6N2E2_524 0.48 +0.5
594,142 - Pf6N2E2_524 0.48 +0.4
594,142 - Pf6N2E2_524 0.48 +1.0
594,180 + Pf6N2E2_524 0.52 +0.0
594,180 + Pf6N2E2_524 0.52 +0.3
594,180 + Pf6N2E2_524 0.52 -2.2
594,181 - Pf6N2E2_524 0.52 +0.1
594,245 + Pf6N2E2_524 0.59 +0.2
594,268 - Pf6N2E2_524 0.61 +0.4
594,276 + Pf6N2E2_524 0.62 +0.7
594,276 + Pf6N2E2_524 0.62 -1.3
594,276 + Pf6N2E2_524 0.62 -0.4
594,277 - Pf6N2E2_524 0.62 -0.1
594,277 - Pf6N2E2_524 0.62 -1.1
594,277 - Pf6N2E2_524 0.62 +1.0
594,277 - Pf6N2E2_524 0.62 -0.4
594,277 - Pf6N2E2_524 0.62 +0.3
594,277 - Pf6N2E2_524 0.62 -1.3
594,282 + Pf6N2E2_524 0.62 +1.3
594,282 + Pf6N2E2_524 0.62 -0.0
594,282 + Pf6N2E2_524 0.62 +0.0
594,283 - Pf6N2E2_524 0.62 +0.9
594,354 + Pf6N2E2_524 0.69 +0.4
594,354 + Pf6N2E2_524 0.69 -0.6
594,355 - Pf6N2E2_524 0.69 -0.7
594,355 - Pf6N2E2_524 0.69 -0.7
594,355 - Pf6N2E2_524 0.69 -1.4
594,441 + Pf6N2E2_524 0.78 +0.9
594,441 + Pf6N2E2_524 0.78 -1.8
594,442 - Pf6N2E2_524 0.78 -1.3
594,442 - Pf6N2E2_524 0.78 +1.3
594,582 + -1.9
594,582 + -0.4
594,582 + -0.1
594,583 - -0.9
594,583 - -1.4
594,583 - -1.7
594,730 + +0.5
594,730 + -0.7
594,731 - -0.4
594,731 - -0.7
594,731 - -1.3
594,731 - -0.0
594,731 - -0.1
594,731 - -1.6
594,733 + +0.7
594,734 - -0.6
594,734 - -0.0
594,734 - -0.5
594,734 - +0.1
594,740 - -0.4
594,740 - -0.3
594,740 - +1.1
594,740 - -1.3
594,740 - -0.8
594,740 - -0.4
594,740 - +0.4
594,740 - -0.1
594,760 - -0.3
594,760 - +0.1
594,761 + +0.9
594,762 - +0.1
594,762 - -0.3
594,909 - +0.5
594,991 + -0.5
594,991 + -0.7
595,035 + -1.2
595,035 + -0.5
595,035 + -0.1
595,035 + +0.5
595,035 + +0.0
595,035 + -0.7
595,187 + Pf6N2E2_525 0.47 -0.3
595,187 + Pf6N2E2_525 0.47 -0.1
595,256 + Pf6N2E2_525 0.64 +0.6
595,341 + Pf6N2E2_525 0.85 -0.6
595,341 + Pf6N2E2_525 0.85 -0.2
595,341 + Pf6N2E2_525 0.85 -2.2
595,341 + Pf6N2E2_525 0.85 -3.6
595,341 + Pf6N2E2_525 0.85 -0.9
595,341 + Pf6N2E2_525 0.85 -0.8
595,342 - Pf6N2E2_525 0.85 -1.1
595,342 - Pf6N2E2_525 0.85 -1.4
595,342 - Pf6N2E2_525 0.85 +1.3
595,471 + +0.6
595,471 + -0.2
595,471 + +0.4
595,471 + -0.9
595,471 + +0.1
595,471 + +0.7
595,471 + -1.4
595,471 + -1.0
595,471 + -0.7
595,472 - -1.6
595,472 - +0.2
595,472 - +0.3
595,472 - +1.1
595,472 - -0.6
595,472 - +0.8
595,472 - -0.0
595,477 + -0.5
595,477 + -2.0
595,477 + -0.0
595,478 - -0.5
595,478 - -0.8
595,478 - -1.4
595,478 - +0.6
595,478 - -1.0
595,478 - -0.1
595,478 - +0.2
595,523 - -1.6
595,534 - -0.3
595,555 - +1.7
595,725 + +0.7
595,842 + Pf6N2E2_526 0.17 -0.0
595,843 - Pf6N2E2_526 0.17 -0.1
595,856 + Pf6N2E2_526 0.18 -0.1
595,856 + Pf6N2E2_526 0.18 +0.2
595,856 + Pf6N2E2_526 0.18 +0.0
595,857 - Pf6N2E2_526 0.18 -1.1
595,857 - Pf6N2E2_526 0.18 +0.6

Or see this region's nucleotide sequence