Experiment: Vancomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4984 and Pf6N2E2_4985 are separated by 250 nucleotides Pf6N2E2_4985 and Pf6N2E2_4986 are separated by 27 nucleotides Pf6N2E2_4986 and Pf6N2E2_4987 are separated by 102 nucleotides Pf6N2E2_4987 and Pf6N2E2_4988 are separated by 327 nucleotides
Pf6N2E2_4984 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,751,324 to 5,751,608
_4984
Pf6N2E2_4985 - Nucleoside-diphosphate-sugar epimerases, at 5,751,859 to 5,752,500
_4985
Pf6N2E2_4986 - MORN repeat family protein, at 5,752,528 to 5,754,246
_4986
Pf6N2E2_4987 - MaoC-like domain protein, at 5,754,349 to 5,754,804
_4987
Pf6N2E2_4988 - Antiholin-like protein LrgA, at 5,755,132 to 5,755,497
_4988
Position (kb) 5752
5753
5754
5755 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5751.606 kb on + strand at 5751.634 kb on + strand at 5751.634 kb on + strand at 5751.634 kb on + strand at 5751.634 kb on + strand at 5751.635 kb on - strand at 5751.635 kb on - strand at 5751.635 kb on - strand at 5751.635 kb on - strand at 5751.722 kb on + strand at 5751.723 kb on - strand at 5751.723 kb on - strand at 5751.769 kb on + strand at 5751.786 kb on + strand at 5751.786 kb on + strand at 5751.786 kb on + strand at 5751.786 kb on + strand at 5751.787 kb on - strand at 5751.856 kb on + strand at 5751.856 kb on + strand at 5751.856 kb on + strand at 5751.856 kb on + strand at 5751.856 kb on + strand at 5751.856 kb on + strand at 5751.856 kb on + strand at 5751.856 kb on + strand at 5751.856 kb on + strand at 5751.857 kb on - strand at 5751.857 kb on - strand at 5751.860 kb on + strand at 5751.860 kb on + strand at 5751.860 kb on + strand at 5751.860 kb on + strand at 5751.860 kb on + strand at 5751.860 kb on + strand at 5751.860 kb on + strand at 5751.861 kb on - strand at 5751.861 kb on - strand at 5751.861 kb on - strand at 5751.861 kb on - strand at 5751.861 kb on - strand at 5751.861 kb on - strand at 5751.861 kb on - strand at 5751.873 kb on + strand at 5751.873 kb on + strand at 5751.874 kb on - strand at 5751.972 kb on - strand, within Pf6N2E2_4985 at 5751.972 kb on - strand, within Pf6N2E2_4985 at 5751.972 kb on - strand, within Pf6N2E2_4985 at 5751.972 kb on - strand, within Pf6N2E2_4985 at 5752.127 kb on + strand, within Pf6N2E2_4985 at 5752.128 kb on - strand, within Pf6N2E2_4985 at 5752.128 kb on - strand, within Pf6N2E2_4985 at 5752.128 kb on - strand, within Pf6N2E2_4985 at 5752.496 kb on + strand at 5752.496 kb on + strand at 5752.496 kb on + strand at 5752.496 kb on + strand at 5752.496 kb on + strand at 5752.496 kb on + strand at 5752.496 kb on + strand at 5752.496 kb on + strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.497 kb on - strand at 5752.500 kb on + strand at 5752.500 kb on + strand at 5752.500 kb on + strand at 5752.500 kb on + strand at 5752.501 kb on - strand at 5752.501 kb on - strand at 5752.501 kb on - strand at 5752.501 kb on - strand at 5752.501 kb on - strand at 5752.501 kb on - strand at 5752.501 kb on - strand at 5752.501 kb on - strand at 5752.501 kb on - strand at 5752.501 kb on - strand at 5752.518 kb on - strand at 5752.529 kb on + strand at 5752.529 kb on + strand at 5752.530 kb on - strand at 5752.530 kb on - strand at 5752.530 kb on - strand at 5752.578 kb on + strand at 5752.578 kb on + strand at 5752.579 kb on - strand at 5752.579 kb on - strand at 5752.766 kb on + strand, within Pf6N2E2_4986 at 5752.767 kb on - strand, within Pf6N2E2_4986 at 5752.767 kb on - strand, within Pf6N2E2_4986 at 5753.019 kb on - strand, within Pf6N2E2_4986 at 5753.028 kb on + strand, within Pf6N2E2_4986 at 5753.028 kb on + strand, within Pf6N2E2_4986 at 5753.028 kb on + strand, within Pf6N2E2_4986 at 5753.028 kb on + strand, within Pf6N2E2_4986 at 5753.029 kb on - strand, within Pf6N2E2_4986 at 5753.029 kb on - strand, within Pf6N2E2_4986 at 5753.029 kb on - strand, within Pf6N2E2_4986 at 5753.029 kb on - strand, within Pf6N2E2_4986 at 5753.183 kb on + strand, within Pf6N2E2_4986 at 5753.184 kb on - strand, within Pf6N2E2_4986 at 5753.240 kb on + strand, within Pf6N2E2_4986 at 5753.240 kb on + strand, within Pf6N2E2_4986 at 5753.240 kb on + strand, within Pf6N2E2_4986 at 5753.240 kb on + strand, within Pf6N2E2_4986 at 5753.432 kb on + strand, within Pf6N2E2_4986 at 5753.432 kb on + strand, within Pf6N2E2_4986 at 5753.432 kb on + strand, within Pf6N2E2_4986 at 5753.432 kb on + strand, within Pf6N2E2_4986 at 5753.433 kb on - strand, within Pf6N2E2_4986 at 5753.528 kb on + strand, within Pf6N2E2_4986 at 5753.529 kb on - strand, within Pf6N2E2_4986 at 5753.666 kb on + strand, within Pf6N2E2_4986 at 5753.666 kb on + strand, within Pf6N2E2_4986 at 5753.666 kb on + strand, within Pf6N2E2_4986 at 5753.667 kb on - strand, within Pf6N2E2_4986 at 5753.667 kb on - strand, within Pf6N2E2_4986 at 5753.667 kb on - strand, within Pf6N2E2_4986 at 5753.667 kb on - strand, within Pf6N2E2_4986 at 5753.873 kb on + strand, within Pf6N2E2_4986 at 5753.873 kb on + strand, within Pf6N2E2_4986 at 5753.939 kb on + strand, within Pf6N2E2_4986 at 5753.939 kb on + strand, within Pf6N2E2_4986 at 5753.939 kb on + strand, within Pf6N2E2_4986 at 5753.940 kb on - strand, within Pf6N2E2_4986 at 5753.940 kb on - strand, within Pf6N2E2_4986 at 5753.940 kb on - strand, within Pf6N2E2_4986 at 5754.005 kb on + strand, within Pf6N2E2_4986 at 5754.074 kb on + strand, within Pf6N2E2_4986 at 5754.075 kb on - strand at 5754.220 kb on + strand at 5754.221 kb on - strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.239 kb on - strand at 5754.239 kb on - strand at 5754.239 kb on - strand at 5754.275 kb on + strand at 5754.276 kb on - strand at 5754.276 kb on - strand at 5754.276 kb on - strand at 5754.276 kb on - strand at 5754.276 kb on - strand at 5754.286 kb on + strand at 5754.286 kb on + strand at 5754.287 kb on - strand at 5754.287 kb on - strand at 5754.287 kb on - strand at 5754.301 kb on + strand at 5754.301 kb on + strand at 5754.302 kb on - strand at 5754.302 kb on - strand at 5754.302 kb on - strand at 5754.302 kb on - strand at 5754.344 kb on + strand at 5754.345 kb on - strand at 5754.345 kb on - strand at 5754.345 kb on - strand at 5754.351 kb on - strand at 5754.351 kb on - strand at 5754.383 kb on + strand at 5754.383 kb on + strand at 5754.384 kb on - strand at 5754.384 kb on - strand at 5754.384 kb on - strand at 5754.540 kb on - strand, within Pf6N2E2_4987 at 5754.770 kb on + strand at 5754.771 kb on - strand at 5754.771 kb on - strand at 5754.771 kb on - strand at 5754.771 kb on - strand at 5754.797 kb on + strand at 5754.797 kb on + strand at 5754.798 kb on - strand at 5754.798 kb on - strand at 5754.798 kb on - strand at 5754.798 kb on - strand at 5754.875 kb on + strand at 5754.875 kb on + strand at 5754.876 kb on - strand at 5754.876 kb on - strand at 5754.876 kb on - strand at 5754.876 kb on - strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.897 kb on - strand at 5754.918 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.951 kb on + strand at 5754.951 kb on + strand at 5754.951 kb on + strand at 5754.951 kb on + strand at 5754.952 kb on - strand at 5754.952 kb on - strand at 5754.952 kb on - strand at 5755.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.12 mg/ml remove 5,751,606 + -0.3 5,751,634 + -0.2 5,751,634 + +1.1 5,751,634 + +1.6 5,751,634 + +0.2 5,751,635 - +0.7 5,751,635 - +0.2 5,751,635 - +0.4 5,751,635 - +0.4 5,751,722 + +0.5 5,751,723 - +0.7 5,751,723 - +0.0 5,751,769 + -0.3 5,751,786 + +1.5 5,751,786 + +1.0 5,751,786 + +0.4 5,751,786 + +0.9 5,751,787 - +0.2 5,751,856 + +0.2 5,751,856 + -1.2 5,751,856 + -0.6 5,751,856 + +1.1 5,751,856 + +0.8 5,751,856 + -0.2 5,751,856 + -0.4 5,751,856 + +0.8 5,751,856 + -0.8 5,751,857 - +0.6 5,751,857 - -0.2 5,751,860 + +0.2 5,751,860 + -0.4 5,751,860 + -0.9 5,751,860 + +3.2 5,751,860 + +0.4 5,751,860 + +1.0 5,751,860 + +0.7 5,751,861 - +0.0 5,751,861 - -0.4 5,751,861 - +0.1 5,751,861 - -0.1 5,751,861 - +0.4 5,751,861 - +0.4 5,751,861 - -0.4 5,751,873 + +4.6 5,751,873 + +0.7 5,751,874 - +0.2 5,751,972 - Pf6N2E2_4985 0.18 +2.0 5,751,972 - Pf6N2E2_4985 0.18 -0.4 5,751,972 - Pf6N2E2_4985 0.18 +0.2 5,751,972 - Pf6N2E2_4985 0.18 -0.2 5,752,127 + Pf6N2E2_4985 0.42 +0.5 5,752,128 - Pf6N2E2_4985 0.42 -0.7 5,752,128 - Pf6N2E2_4985 0.42 +0.8 5,752,128 - Pf6N2E2_4985 0.42 -0.5 5,752,496 + +0.7 5,752,496 + -1.0 5,752,496 + +0.5 5,752,496 + +1.2 5,752,496 + +0.2 5,752,496 + -0.9 5,752,496 + +0.8 5,752,496 + +0.8 5,752,497 - -0.4 5,752,497 - -0.6 5,752,497 - +0.7 5,752,497 - +0.8 5,752,497 - -0.1 5,752,497 - -1.4 5,752,497 - +0.1 5,752,497 - -0.1 5,752,497 - +0.1 5,752,497 - -0.8 5,752,497 - -0.2 5,752,497 - +0.4 5,752,500 + -1.9 5,752,500 + +1.9 5,752,500 + +0.3 5,752,500 + -0.2 5,752,501 - +0.7 5,752,501 - -0.0 5,752,501 - +0.3 5,752,501 - -1.2 5,752,501 - -0.0 5,752,501 - +0.6 5,752,501 - +0.6 5,752,501 - +0.7 5,752,501 - +0.1 5,752,501 - -0.0 5,752,518 - -0.3 5,752,529 + -0.1 5,752,529 + +0.8 5,752,530 - +0.4 5,752,530 - +0.3 5,752,530 - -0.6 5,752,578 + +0.0 5,752,578 + +0.4 5,752,579 - +0.7 5,752,579 - +0.2 5,752,766 + Pf6N2E2_4986 0.14 -0.3 5,752,767 - Pf6N2E2_4986 0.14 +0.1 5,752,767 - Pf6N2E2_4986 0.14 -0.3 5,753,019 - Pf6N2E2_4986 0.29 +0.3 5,753,028 + Pf6N2E2_4986 0.29 +0.5 5,753,028 + Pf6N2E2_4986 0.29 -0.5 5,753,028 + Pf6N2E2_4986 0.29 -0.0 5,753,028 + Pf6N2E2_4986 0.29 +1.8 5,753,029 - Pf6N2E2_4986 0.29 -0.8 5,753,029 - Pf6N2E2_4986 0.29 +0.5 5,753,029 - Pf6N2E2_4986 0.29 +2.7 5,753,029 - Pf6N2E2_4986 0.29 +1.5 5,753,183 + Pf6N2E2_4986 0.38 +1.2 5,753,184 - Pf6N2E2_4986 0.38 +0.2 5,753,240 + Pf6N2E2_4986 0.41 +0.3 5,753,240 + Pf6N2E2_4986 0.41 +0.8 5,753,240 + Pf6N2E2_4986 0.41 +0.5 5,753,240 + Pf6N2E2_4986 0.41 +0.8 5,753,432 + Pf6N2E2_4986 0.53 +0.4 5,753,432 + Pf6N2E2_4986 0.53 +0.4 5,753,432 + Pf6N2E2_4986 0.53 -0.0 5,753,432 + Pf6N2E2_4986 0.53 +0.1 5,753,433 - Pf6N2E2_4986 0.53 +0.5 5,753,528 + Pf6N2E2_4986 0.58 +0.6 5,753,529 - Pf6N2E2_4986 0.58 +0.0 5,753,666 + Pf6N2E2_4986 0.66 -0.0 5,753,666 + Pf6N2E2_4986 0.66 +0.8 5,753,666 + Pf6N2E2_4986 0.66 +0.4 5,753,667 - Pf6N2E2_4986 0.66 -0.3 5,753,667 - Pf6N2E2_4986 0.66 +0.4 5,753,667 - Pf6N2E2_4986 0.66 +0.6 5,753,667 - Pf6N2E2_4986 0.66 -0.2 5,753,873 + Pf6N2E2_4986 0.78 -0.2 5,753,873 + Pf6N2E2_4986 0.78 +1.5 5,753,939 + Pf6N2E2_4986 0.82 +0.5 5,753,939 + Pf6N2E2_4986 0.82 +0.9 5,753,939 + Pf6N2E2_4986 0.82 +0.4 5,753,940 - Pf6N2E2_4986 0.82 +0.3 5,753,940 - Pf6N2E2_4986 0.82 -0.4 5,753,940 - Pf6N2E2_4986 0.82 +0.0 5,754,005 + Pf6N2E2_4986 0.86 +0.1 5,754,074 + Pf6N2E2_4986 0.90 +1.0 5,754,075 - +0.6 5,754,220 + +0.4 5,754,221 - +0.8 5,754,238 + -0.1 5,754,238 + +0.0 5,754,238 + +0.7 5,754,238 + -0.5 5,754,238 + -0.1 5,754,238 + +0.7 5,754,238 + +0.8 5,754,238 + +0.2 5,754,238 + +1.2 5,754,239 - +1.1 5,754,239 - +0.8 5,754,239 - +0.0 5,754,275 + +1.2 5,754,276 - +0.9 5,754,276 - +0.1 5,754,276 - -0.3 5,754,276 - +0.3 5,754,276 - +0.7 5,754,286 + -0.5 5,754,286 + -0.0 5,754,287 - -0.0 5,754,287 - -0.3 5,754,287 - -0.5 5,754,301 + +0.6 5,754,301 + -0.1 5,754,302 - +1.5 5,754,302 - +0.7 5,754,302 - -0.2 5,754,302 - +0.2 5,754,344 + +0.6 5,754,345 - -0.8 5,754,345 - +0.5 5,754,345 - +0.3 5,754,351 - +0.4 5,754,351 - +0.5 5,754,383 + +1.8 5,754,383 + -0.0 5,754,384 - -2.2 5,754,384 - +0.0 5,754,384 - -0.3 5,754,540 - Pf6N2E2_4987 0.42 +0.4 5,754,770 + +0.9 5,754,771 - -0.2 5,754,771 - -0.3 5,754,771 - -1.0 5,754,771 - +0.6 5,754,797 + +0.8 5,754,797 + +0.2 5,754,798 - -1.3 5,754,798 - +0.1 5,754,798 - +0.2 5,754,798 - -0.4 5,754,875 + -0.6 5,754,875 + -0.1 5,754,876 - -1.4 5,754,876 - +0.3 5,754,876 - -0.2 5,754,876 - -0.1 5,754,896 + -0.3 5,754,896 + -0.2 5,754,896 + +1.0 5,754,896 + -0.1 5,754,896 + -0.5 5,754,896 + +0.6 5,754,896 + -0.5 5,754,896 + -0.2 5,754,896 + +0.2 5,754,896 + -0.5 5,754,897 - +0.2 5,754,918 + +0.0 5,754,949 + -0.4 5,754,949 + -0.3 5,754,949 + -0.1 5,754,949 + -0.3 5,754,949 + +0.3 5,754,949 + -0.6 5,754,949 + +0.2 5,754,949 + +0.1 5,754,949 + +0.5 5,754,949 + +0.3 5,754,949 + +0.5 5,754,949 + +0.2 5,754,949 + -0.1 5,754,949 + -1.1 5,754,949 + -0.9 5,754,949 + +0.5 5,754,950 - +0.1 5,754,950 - +0.1 5,754,950 - -0.0 5,754,950 - +0.5 5,754,950 - -0.4 5,754,950 - -1.0 5,754,950 - +0.0 5,754,950 - +0.1 5,754,950 - -0.1 5,754,950 - +0.6 5,754,950 - -0.4 5,754,950 - -1.3 5,754,950 - -0.1 5,754,950 - +1.3 5,754,950 - +0.8 5,754,950 - -0.3 5,754,950 - -0.5 5,754,950 - -0.6 5,754,950 - -0.2 5,754,950 - +0.8 5,754,951 + +0.6 5,754,951 + +0.4 5,754,951 + -1.0 5,754,951 + -0.4 5,754,952 - +0.9 5,754,952 - +0.9 5,754,952 - -0.5 5,755,029 - -0.7
Or see this region's nucleotide sequence