Experiment: Vancomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4617 and Pf6N2E2_4618 overlap by 8 nucleotides Pf6N2E2_4618 and Pf6N2E2_4619 are separated by 840 nucleotides
Pf6N2E2_4617 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 5,341,876 to 5,347,809
_4617
Pf6N2E2_4618 - Chemotaxis signal transduction protein, at 5,347,802 to 5,348,281
_4618
Pf6N2E2_4619 - Malonate decarboxylase alpha subunit, at 5,349,122 to 5,350,792
_4619
Position (kb) 5347
5348
5349 Strain fitness (log2 ratio) -2
-1
0
1 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.100 kb on - strand, within Pf6N2E2_4617 at 5347.100 kb on - strand, within Pf6N2E2_4617 at 5347.100 kb on - strand, within Pf6N2E2_4617 at 5347.127 kb on - strand, within Pf6N2E2_4617 at 5347.413 kb on - strand at 5347.413 kb on - strand at 5347.738 kb on + strand at 5347.739 kb on - strand at 5347.753 kb on + strand at 5348.123 kb on + strand, within Pf6N2E2_4618 at 5348.124 kb on - strand, within Pf6N2E2_4618 at 5348.148 kb on - strand, within Pf6N2E2_4618 at 5348.148 kb on - strand, within Pf6N2E2_4618 at 5348.205 kb on + strand, within Pf6N2E2_4618 at 5348.205 kb on + strand, within Pf6N2E2_4618 at 5348.206 kb on - strand, within Pf6N2E2_4618 at 5348.206 kb on - strand, within Pf6N2E2_4618 at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.287 kb on - strand at 5348.287 kb on - strand at 5348.287 kb on - strand at 5348.287 kb on - strand at 5348.287 kb on - strand at 5348.296 kb on + strand at 5348.296 kb on + strand at 5348.296 kb on + strand at 5348.296 kb on + strand at 5348.297 kb on - strand at 5348.370 kb on - strand at 5348.370 kb on - strand at 5348.414 kb on + strand at 5348.564 kb on - strand at 5348.626 kb on + strand at 5348.626 kb on + strand at 5348.628 kb on + strand at 5348.655 kb on + strand at 5348.655 kb on + strand at 5348.655 kb on + strand at 5348.655 kb on + strand at 5348.655 kb on + strand at 5348.656 kb on - strand at 5348.656 kb on - strand at 5348.656 kb on - strand at 5348.717 kb on + strand at 5348.719 kb on + strand at 5348.720 kb on - strand at 5348.916 kb on + strand at 5348.916 kb on + strand at 5348.917 kb on - strand at 5348.954 kb on + strand at 5348.955 kb on - strand at 5349.084 kb on + strand at 5349.084 kb on + strand at 5349.084 kb on + strand at 5349.084 kb on + strand at 5349.085 kb on - strand at 5349.085 kb on - strand at 5349.135 kb on + strand at 5349.135 kb on + strand at 5349.135 kb on + strand at 5349.136 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.12 mg/ml remove 5,347,093 + Pf6N2E2_4617 0.88 +0.3 5,347,093 + Pf6N2E2_4617 0.88 -1.3 5,347,093 + Pf6N2E2_4617 0.88 -0.5 5,347,093 + Pf6N2E2_4617 0.88 +0.4 5,347,093 + Pf6N2E2_4617 0.88 -0.8 5,347,093 + Pf6N2E2_4617 0.88 -0.0 5,347,093 + Pf6N2E2_4617 0.88 +0.0 5,347,093 + Pf6N2E2_4617 0.88 -0.1 5,347,093 + Pf6N2E2_4617 0.88 -0.5 5,347,093 + Pf6N2E2_4617 0.88 -0.5 5,347,093 + Pf6N2E2_4617 0.88 +0.0 5,347,093 + Pf6N2E2_4617 0.88 +0.5 5,347,094 - Pf6N2E2_4617 0.88 -1.7 5,347,094 - Pf6N2E2_4617 0.88 -0.4 5,347,094 - Pf6N2E2_4617 0.88 -1.3 5,347,094 - Pf6N2E2_4617 0.88 +1.4 5,347,094 - Pf6N2E2_4617 0.88 -1.5 5,347,094 - Pf6N2E2_4617 0.88 -1.8 5,347,094 - Pf6N2E2_4617 0.88 -0.7 5,347,100 - Pf6N2E2_4617 0.88 +0.7 5,347,100 - Pf6N2E2_4617 0.88 -2.7 5,347,100 - Pf6N2E2_4617 0.88 -0.5 5,347,127 - Pf6N2E2_4617 0.88 -0.5 5,347,413 - -0.1 5,347,413 - +0.4 5,347,738 + -0.8 5,347,739 - +0.5 5,347,753 + +0.1 5,348,123 + Pf6N2E2_4618 0.67 -0.5 5,348,124 - Pf6N2E2_4618 0.67 -0.5 5,348,148 - Pf6N2E2_4618 0.72 -0.9 5,348,148 - Pf6N2E2_4618 0.72 -1.8 5,348,205 + Pf6N2E2_4618 0.84 -0.5 5,348,205 + Pf6N2E2_4618 0.84 -0.1 5,348,206 - Pf6N2E2_4618 0.84 -0.5 5,348,206 - Pf6N2E2_4618 0.84 -1.1 5,348,286 + -0.2 5,348,286 + +0.4 5,348,286 + -0.0 5,348,286 + +0.1 5,348,286 + +0.3 5,348,286 + +0.7 5,348,286 + +0.1 5,348,286 + +1.2 5,348,287 - +0.4 5,348,287 - +1.2 5,348,287 - -0.4 5,348,287 - +0.5 5,348,287 - -0.4 5,348,296 + -0.2 5,348,296 + +0.4 5,348,296 + +0.0 5,348,296 + +0.4 5,348,297 - +0.0 5,348,370 - -0.7 5,348,370 - -0.6 5,348,414 + +1.2 5,348,564 - -0.3 5,348,626 + -0.1 5,348,626 + -0.7 5,348,628 + -0.1 5,348,655 + -0.5 5,348,655 + +0.5 5,348,655 + +0.8 5,348,655 + -0.1 5,348,655 + +0.6 5,348,656 - -0.2 5,348,656 - +0.3 5,348,656 - +0.6 5,348,717 + -1.0 5,348,719 + -0.7 5,348,720 - -1.3 5,348,916 + -0.4 5,348,916 + +0.6 5,348,917 - -0.0 5,348,954 + -0.2 5,348,955 - -0.1 5,349,084 + +1.0 5,349,084 + +0.5 5,349,084 + -0.3 5,349,084 + +1.5 5,349,085 - +0.3 5,349,085 - -0.1 5,349,135 + -0.4 5,349,135 + -1.1 5,349,135 + +0.8 5,349,136 - +0.8
Or see this region's nucleotide sequence