Experiment: Vancomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_405 and Pf6N2E2_406 are separated by 341 nucleotides
Pf6N2E2_405 - hypothetical protein, at 475,529 to 475,801
_405
Pf6N2E2_406 - hypothetical protein, at 476,143 to 477,102
_406
Position (kb) 475
476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 474.627 kb on + strand at 474.627 kb on + strand at 474.834 kb on + strand at 474.835 kb on - strand at 474.835 kb on - strand at 474.840 kb on + strand at 474.930 kb on + strand at 474.973 kb on - strand at 475.054 kb on + strand at 475.134 kb on + strand at 475.134 kb on + strand at 475.134 kb on + strand at 475.135 kb on - strand at 475.136 kb on + strand at 475.176 kb on + strand at 475.188 kb on + strand at 475.188 kb on + strand at 475.189 kb on - strand at 475.189 kb on - strand at 475.219 kb on - strand at 475.245 kb on + strand at 475.245 kb on + strand at 475.269 kb on + strand at 475.269 kb on + strand at 475.270 kb on - strand at 475.270 kb on - strand at 475.270 kb on - strand at 475.345 kb on - strand at 475.414 kb on + strand at 475.414 kb on + strand at 475.414 kb on + strand at 475.415 kb on - strand at 475.415 kb on - strand at 475.415 kb on - strand at 475.480 kb on + strand at 475.480 kb on + strand at 475.480 kb on + strand at 475.480 kb on + strand at 475.480 kb on + strand at 475.481 kb on - strand at 475.481 kb on - strand at 475.481 kb on - strand at 475.530 kb on + strand at 475.531 kb on - strand at 475.676 kb on + strand, within Pf6N2E2_405 at 475.677 kb on - strand, within Pf6N2E2_405 at 475.791 kb on + strand at 475.791 kb on + strand at 475.791 kb on + strand at 475.791 kb on + strand at 475.791 kb on + strand at 475.791 kb on + strand at 475.792 kb on - strand at 475.792 kb on - strand at 475.792 kb on - strand at 475.792 kb on - strand at 475.792 kb on - strand at 475.792 kb on - strand at 475.792 kb on - strand at 475.792 kb on - strand at 475.792 kb on - strand at 475.792 kb on - strand at 475.884 kb on - strand at 475.885 kb on + strand at 475.885 kb on + strand at 475.886 kb on - strand at 475.986 kb on - strand at 475.986 kb on - strand at 475.995 kb on + strand at 475.996 kb on - strand at 476.151 kb on - strand at 476.151 kb on - strand at 476.151 kb on - strand at 476.235 kb on - strand at 476.250 kb on + strand, within Pf6N2E2_406 at 476.251 kb on - strand, within Pf6N2E2_406 at 476.251 kb on - strand, within Pf6N2E2_406 at 476.330 kb on + strand, within Pf6N2E2_406 at 476.331 kb on - strand, within Pf6N2E2_406 at 476.331 kb on - strand, within Pf6N2E2_406 at 476.386 kb on + strand, within Pf6N2E2_406 at 476.386 kb on + strand, within Pf6N2E2_406 at 476.386 kb on + strand, within Pf6N2E2_406 at 476.386 kb on + strand, within Pf6N2E2_406 at 476.386 kb on + strand, within Pf6N2E2_406 at 476.386 kb on + strand, within Pf6N2E2_406 at 476.568 kb on - strand, within Pf6N2E2_406 at 476.728 kb on + strand, within Pf6N2E2_406 at 476.728 kb on + strand, within Pf6N2E2_406 at 476.730 kb on + strand, within Pf6N2E2_406 at 476.730 kb on + strand, within Pf6N2E2_406 at 476.731 kb on - strand, within Pf6N2E2_406 at 476.748 kb on + strand, within Pf6N2E2_406 at 476.748 kb on + strand, within Pf6N2E2_406
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.12 mg/ml remove 474,627 + -0.4 474,627 + -0.6 474,834 + +1.0 474,835 - +0.5 474,835 - -0.1 474,840 + +0.2 474,930 + +0.1 474,973 - +0.5 475,054 + -2.8 475,134 + -1.1 475,134 + +0.8 475,134 + +0.1 475,135 - +0.8 475,136 + -1.0 475,176 + +0.5 475,188 + -0.4 475,188 + -0.2 475,189 - +0.0 475,189 - +0.3 475,219 - -0.4 475,245 + +0.3 475,245 + +2.1 475,269 + +1.3 475,269 + +0.2 475,270 - +0.6 475,270 - +1.6 475,270 - -0.2 475,345 - +0.4 475,414 + -1.5 475,414 + -1.0 475,414 + -1.0 475,415 - -1.7 475,415 - -0.2 475,415 - -2.2 475,480 + -0.2 475,480 + -0.7 475,480 + +0.6 475,480 + -0.4 475,480 + +0.7 475,481 - -1.2 475,481 - +0.0 475,481 - +0.4 475,530 + +0.2 475,531 - -1.7 475,676 + Pf6N2E2_405 0.54 -1.2 475,677 - Pf6N2E2_405 0.54 -1.0 475,791 + -0.9 475,791 + -0.8 475,791 + -0.7 475,791 + +0.8 475,791 + +0.0 475,791 + -0.9 475,792 - -0.1 475,792 - -0.4 475,792 - -0.3 475,792 - +0.0 475,792 - +0.1 475,792 - +0.7 475,792 - +0.3 475,792 - +0.5 475,792 - -0.1 475,792 - +0.2 475,884 - +1.2 475,885 + -0.0 475,885 + +1.8 475,886 - -0.1 475,986 - -0.7 475,986 - -1.1 475,995 + -0.0 475,996 - +0.5 476,151 - +0.3 476,151 - +0.9 476,151 - +0.3 476,235 - +1.0 476,250 + Pf6N2E2_406 0.11 -0.4 476,251 - Pf6N2E2_406 0.11 +0.0 476,251 - Pf6N2E2_406 0.11 +0.9 476,330 + Pf6N2E2_406 0.19 -0.4 476,331 - Pf6N2E2_406 0.20 +0.3 476,331 - Pf6N2E2_406 0.20 -0.5 476,386 + Pf6N2E2_406 0.25 +0.4 476,386 + Pf6N2E2_406 0.25 -0.1 476,386 + Pf6N2E2_406 0.25 -0.6 476,386 + Pf6N2E2_406 0.25 -0.5 476,386 + Pf6N2E2_406 0.25 +1.3 476,386 + Pf6N2E2_406 0.25 +0.1 476,568 - Pf6N2E2_406 0.44 -0.2 476,728 + Pf6N2E2_406 0.61 -0.7 476,728 + Pf6N2E2_406 0.61 +0.5 476,730 + Pf6N2E2_406 0.61 -1.7 476,730 + Pf6N2E2_406 0.61 -0.2 476,731 - Pf6N2E2_406 0.61 +1.3 476,748 + Pf6N2E2_406 0.63 -1.0 476,748 + Pf6N2E2_406 0.63 +0.7
Or see this region's nucleotide sequence