Experiment: Vancomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_19 and Pf6N2E2_20 are separated by 0 nucleotides Pf6N2E2_20 and Pf6N2E2_21 are separated by 531 nucleotides
Pf6N2E2_19 - Pyoverdine efflux carrier and ATP binding protein, at 52,480 to 54,450
_19
Pf6N2E2_20 - pyoverdine-specific efflux macA-like protein, at 54,451 to 55,602
_20
Pf6N2E2_21 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis, at 56,134 to 56,616
_21
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 53.481 kb on - strand, within Pf6N2E2_19 at 54.107 kb on + strand, within Pf6N2E2_19 at 54.107 kb on + strand, within Pf6N2E2_19 at 54.161 kb on + strand, within Pf6N2E2_19 at 54.712 kb on + strand, within Pf6N2E2_20 at 54.712 kb on + strand, within Pf6N2E2_20 at 54.731 kb on + strand, within Pf6N2E2_20 at 54.732 kb on - strand, within Pf6N2E2_20 at 54.732 kb on - strand, within Pf6N2E2_20 at 54.732 kb on - strand, within Pf6N2E2_20 at 54.732 kb on - strand, within Pf6N2E2_20 at 54.872 kb on + strand, within Pf6N2E2_20 at 54.873 kb on - strand, within Pf6N2E2_20 at 55.422 kb on - strand, within Pf6N2E2_20 at 55.668 kb on - strand at 55.694 kb on - strand at 55.761 kb on + strand at 55.761 kb on + strand at 55.762 kb on - strand at 55.762 kb on - strand at 55.762 kb on - strand at 55.773 kb on + strand at 55.774 kb on - strand at 55.836 kb on + strand at 55.845 kb on + strand at 55.845 kb on + strand at 55.916 kb on + strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.935 kb on + strand at 55.935 kb on + strand at 55.935 kb on + strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.944 kb on + strand at 55.944 kb on + strand at 55.945 kb on - strand at 55.997 kb on + strand at 55.998 kb on - strand at 56.021 kb on - strand at 56.029 kb on + strand at 56.104 kb on + strand at 56.104 kb on + strand at 56.146 kb on + strand at 56.147 kb on - strand at 56.147 kb on - strand at 56.224 kb on + strand, within Pf6N2E2_21 at 56.224 kb on + strand, within Pf6N2E2_21 at 56.225 kb on - strand, within Pf6N2E2_21 at 56.225 kb on - strand, within Pf6N2E2_21 at 56.284 kb on + strand, within Pf6N2E2_21 at 56.284 kb on + strand, within Pf6N2E2_21 at 56.328 kb on + strand, within Pf6N2E2_21 at 56.329 kb on - strand, within Pf6N2E2_21
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.12 mg/ml remove 53,481 - Pf6N2E2_19 0.51 -1.2 54,107 + Pf6N2E2_19 0.83 -0.4 54,107 + Pf6N2E2_19 0.83 +0.1 54,161 + Pf6N2E2_19 0.85 -0.5 54,712 + Pf6N2E2_20 0.23 +0.2 54,712 + Pf6N2E2_20 0.23 +0.7 54,731 + Pf6N2E2_20 0.24 +0.9 54,732 - Pf6N2E2_20 0.24 -0.0 54,732 - Pf6N2E2_20 0.24 +0.5 54,732 - Pf6N2E2_20 0.24 +0.3 54,732 - Pf6N2E2_20 0.24 +0.9 54,872 + Pf6N2E2_20 0.37 +0.5 54,873 - Pf6N2E2_20 0.37 +0.8 55,422 - Pf6N2E2_20 0.84 +0.6 55,668 - +0.2 55,694 - -0.2 55,761 + +0.3 55,761 + +0.2 55,762 - +1.0 55,762 - -0.1 55,762 - +0.6 55,773 + -1.9 55,774 - -1.0 55,836 + +0.1 55,845 + +0.1 55,845 + +0.3 55,916 + -0.6 55,917 - -0.0 55,917 - -3.3 55,917 - -1.2 55,917 - -1.0 55,935 + -0.2 55,935 + -0.0 55,935 + +0.7 55,936 - -2.0 55,936 - -1.0 55,936 - +0.3 55,936 - +0.9 55,936 - +0.4 55,936 - +0.5 55,936 - -0.1 55,944 + -1.5 55,944 + -1.4 55,945 - -0.6 55,997 + +0.6 55,998 - +0.2 56,021 - -1.9 56,029 + -0.2 56,104 + +0.5 56,104 + -2.3 56,146 + -1.3 56,147 - -0.3 56,147 - +1.3 56,224 + Pf6N2E2_21 0.19 +1.8 56,224 + Pf6N2E2_21 0.19 +0.4 56,225 - Pf6N2E2_21 0.19 +0.2 56,225 - Pf6N2E2_21 0.19 +0.6 56,284 + Pf6N2E2_21 0.31 -0.9 56,284 + Pf6N2E2_21 0.31 +0.3 56,328 + Pf6N2E2_21 0.40 -1.4 56,329 - Pf6N2E2_21 0.40 -1.3
Or see this region's nucleotide sequence